RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 COL5A2P05997 1499 aaPredicted RBP12.26□□□□□ -0.45
USP54-211ENST00000474929 DNAJC5GQ8N7S2 189 aa12.25□□□□□ -0.45
USP54-211ENST00000474929 NGDNQ8NEJ9 315 aaKnown RBP12.25□□□□□ -0.45
USP54-211ENST00000474929 WNK3Q9BYP7 1800 aa12.25□□□□□ -0.45
USP54-211ENST00000474929 ZC3H6P61129 1189 aaKnown RBP12.24□□□□□ -0.45
USP54-211ENST00000474929 ADGRF5Q8IZF2 1346 aa12.23□□□□□ -0.45
USP54-211ENST00000474929 KLRG1Q96E93 195 aa12.23□□□□□ -0.45
USP54-211ENST00000474929 TOMM70O94826 608 aa12.22□□□□□ -0.45
USP54-211ENST00000474929 ZNF526Q8TF50 670 aaPredicted RBP12.22□□□□□ -0.45
USP54-211ENST00000474929 WWC3Q9ULE0 1092 aa12.22□□□□□ -0.45
USP54-211ENST00000474929 ARHGEF28Q8N1W1 1705 aaKnown RBP12.22□□□□□ -0.45
USP54-211ENST00000474929 NHSQ6T4R5 1651 aa12.22□□□□□ -0.45
USP54-211ENST00000474929 KIF3CO14782 793 aa12.21□□□□□ -0.45
USP54-211ENST00000474929 YBX3P16989 372 aaKnown RBP eCLIP12.21□□□□□ -0.45
USP54-211ENST00000474929 TMEM132EQ6IEE7 984 aa12.21□□□□□ -0.45
USP54-211ENST00000474929 NLGN2Q8NFZ4 835 aa12.2□□□□□ -0.46
USP54-211ENST00000474929 PRAM1Q96QH2 718 aa12.2□□□□□ -0.46
USP54-211ENST00000474929 POGKQ9P215 609 aa12.2□□□□□ -0.46
USP54-211ENST00000474929 USP19O94966 1318 aa12.17□□□□□ -0.46
USP54-211ENST00000474929 TRPM1Q7Z4N2 1603 aa12.17□□□□□ -0.46
USP54-211ENST00000474929 MARCH10Q8NA82 808 aaPredicted RBP12.16□□□□□ -0.46
USP54-211ENST00000474929 TNS2Q63HR2 1409 aa12.16□□□□□ -0.46
USP54-211ENST00000474929 SAFB2Q14151 953 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP54-211ENST00000474929 SLC27A3Q5K4L6 730 aa12.15□□□□□ -0.46
USP54-211ENST00000474929 TOM1L2Q6ZVM7 507 aa12.15□□□□□ -0.46
USP54-211ENST00000474929 PTF1AQ7RTS3 328 aa12.15□□□□□ -0.46
USP54-211ENST00000474929 PRR36Q9H6K5 1346 aa12.14□□□□□ -0.47
USP54-211ENST00000474929 SPATA31E1Q6ZUB1 1445 aa12.14□□□□□ -0.47
USP54-211ENST00000474929 ZNF827Q17R98 1081 aa12.14□□□□□ -0.47
USP54-211ENST00000474929 RBM46Q8TBY0 533 aaKnown RBP12.14□□□□□ -0.47
USP54-211ENST00000474929 C14orf93Q9H972 538 aaKnown RBP12.14□□□□□ -0.47
USP54-211ENST00000474929 CD2APQ9Y5K6 639 aa12.14□□□□□ -0.47
USP54-211ENST00000474929 ABCC6O95255 1503 aa12.13□□□□□ -0.47
USP54-211ENST00000474929 CICQ96RK0 1608 aaPredicted RBP12.13□□□□□ -0.47
USP54-211ENST00000474929 WASLO00401 505 aaPredicted RBP12.13□□□□□ -0.47
USP54-211ENST00000474929 FSTL1Q12841 308 aa12.13□□□□□ -0.47
USP54-211ENST00000474929 PIK3C2AO00443 1686 aa12.13□□□□□ -0.47
USP54-211ENST00000474929 WDR17Q8IZU2 1322 aa12.12□□□□□ -0.47
USP54-211ENST00000474929 NLRP13Q86W25 1043 aa12.12□□□□□ -0.47
USP54-211ENST00000474929 C16orf71Q8IYS4 520 aaPredicted RBP12.12□□□□□ -0.47
USP54-211ENST00000474929 AKT1S1Q96B36 256 aa12.12□□□□□ -0.47
USP54-211ENST00000474929 POLR3AO14802 1390 aaPredicted RBP12.12□□□□□ -0.47
USP54-211ENST00000474929 PNPLA7Q6ZV29 1317 aa12.11□□□□□ -0.47
USP54-211ENST00000474929 BTAF1O14981 1849 aa12.11□□□□□ -0.47
USP54-211ENST00000474929 EXOC5O00471 708 aa12.11□□□□□ -0.47
USP54-211ENST00000474929 HMGB2P26583 209 aaKnown RBP12.11□□□□□ -0.47
USP54-211ENST00000474929 ABTB2Q8N961 1025 aa12.11□□□□□ -0.47
USP54-211ENST00000474929 TFCP2L1Q9NZI6 479 aa12.11□□□□□ -0.47
USP54-211ENST00000474929 CCDC7Q96M83 1385 aa12.1□□□□□ -0.47
USP54-211ENST00000474929 GCP02774 474 aa12.1□□□□□ -0.47
USP54-211ENST00000474929 USP6P35125 1406 aa12.1□□□□□ -0.47
USP54-211ENST00000474929 HSPA1AP0DMV8 641 aaKnown RBP12.09□□□□□ -0.47
USP54-211ENST00000474929 HSPA1BP0DMV9 641 aaKnown RBP12.09□□□□□ -0.47
USP54-211ENST00000474929 NUTM2GQ5VZR2 741 aa12.09□□□□□ -0.47
USP54-211ENST00000474929 TUBGCP6Q96RT7 1819 aa12.09□□□□□ -0.47
USP54-211ENST00000474929 RGL3Q3MIN7 710 aa12.08□□□□□ -0.48
USP54-211ENST00000474929 HIRIP3Q9BW71 556 aaPredicted RBP12.08□□□□□ -0.48
USP54-211ENST00000474929 SLC4A1APQ9BWU0 796 aaKnown RBP12.08□□□□□ -0.48
USP54-211ENST00000474929 MINK1Q8N4C8 1332 aaPredicted RBP12.08□□□□□ -0.48
USP54-211ENST00000474929 PLEKHG2Q9H7P9 1386 aa12.07□□□□□ -0.48
USP54-211ENST00000474929 C10orf71Q711Q0 1435 aa12.07□□□□□ -0.48
USP54-211ENST00000474929 CARD10Q9BWT7 1032 aa12.07□□□□□ -0.48
USP54-211ENST00000474929 SLIT3O75094 1523 aa12.06□□□□□ -0.48
USP54-211ENST00000474929 PPIP5K1Q6PFW1 1433 aa12.05□□□□□ -0.48
USP54-211ENST00000474929 ITGAEP38570 1179 aa12.05□□□□□ -0.48
USP54-211ENST00000474929 LRRC4BQ9NT99 713 aa12.05□□□□□ -0.48
USP54-211ENST00000474929 ADGRB1O14514 1584 aa12.05□□□□□ -0.48
USP54-211ENST00000474929 PCNTO95613 3336 aa12.04□□□□□ -0.48
USP54-211ENST00000474929 CPSF1Q10570 1443 aaKnown RBP12.04□□□□□ -0.48
USP54-211ENST00000474929 CFAP70Q5T0N1 1121 aa12.04□□□□□ -0.48
USP54-211ENST00000474929 NUDT16Q96DE0 195 aaKnown RBP12.04□□□□□ -0.48
USP54-211ENST00000474929 ACEP12821 1306 aa12.04□□□□□ -0.48
USP54-211ENST00000474929 ZBTB7CA1YPR0 619 aa12.03□□□□□ -0.48
USP54-211ENST00000474929 MSH5O43196 834 aa12.03□□□□□ -0.48
USP54-211ENST00000474929 CSB-PGBD3P0DP91 1061 aa12.03□□□□□ -0.48
USP54-211ENST00000474929 IGSF1Q8N6C5 1336 aa12.03□□□□□ -0.48
USP54-211ENST00000474929 COL18A1P39060 1754 aa12.02□□□□□ -0.48
USP54-211ENST00000474929 FLAD1Q8NFF5 587 aa12.02□□□□□ -0.49
USP54-211ENST00000474929 ACSBG1Q96GR2 724 aa12.02□□□□□ -0.49
USP54-211ENST00000474929 CCDC61Q9Y6R9 512 aa12.02□□□□□ -0.49
USP54-211ENST00000474929 PLEKHG3A1L390 1219 aa12.01□□□□□ -0.49
USP54-211ENST00000474929 FAM161AQ3B820 660 aa12.01□□□□□ -0.49
USP54-211ENST00000474929 SMC1BQ8NDV3 1235 aa12.01□□□□□ -0.49
USP54-211ENST00000474929 KDM2BQ8NHM5 1336 aa12.01□□□□□ -0.49
USP54-211ENST00000474929 TNRC6CQ9HCJ0 1690 aaKnown RBP12□□□□□ -0.49
USP54-211ENST00000474929 HTRA3P83110 453 aa12□□□□□ -0.49
USP54-211ENST00000474929 TRAK1Q9UPV9 953 aa12□□□□□ -0.49
USP54-211ENST00000474929 QRICH2Q9H0J4 1663 aa12□□□□□ -0.49
USP54-211ENST00000474929 LY75O60449 1722 aa12□□□□□ -0.49
USP54-211ENST00000474929 NMRK2Q9NPI5 230 aa11.99□□□□□ -0.49
USP54-211ENST00000474929 PRDM10Q9NQV6 1147 aa11.99□□□□□ -0.49
USP54-211ENST00000474929 PXDNLA1KZ92 1463 aa11.98□□□□□ -0.49
USP54-211ENST00000474929 NSD3Q9BZ95 1437 aa11.98□□□□□ -0.49
USP54-211ENST00000474929 KCNH5Q8NCM2 988 aa11.98□□□□□ -0.49
USP54-211ENST00000474929 KIAA1210Q9ULL0 1709 aa11.97□□□□□ -0.49
USP54-211ENST00000474929 KAT6BQ8WYB5 2073 aa11.96□□□□□ -0.49
USP54-211ENST00000474929 NLRP6P59044 892 aa11.96□□□□□ -0.49
USP54-211ENST00000474929 MLLT1Q03111 559 aaPredicted RBP11.96□□□□□ -0.49
USP54-211ENST00000474929 IL2RBP14784 551 aa11.95□□□□□ -0.5
USP54-211ENST00000474929 MSL1Q68DK7 614 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms