RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 EZH2Q15910 746 aaKnown RBP23.58■■□□□ 1.37
USP40-212ENST00000473191 FAM196AQ6ZSG2 479 aa23.58■■□□□ 1.37
USP40-212ENST00000473191 TOM1L2Q6ZVM7 507 aa23.58■■□□□ 1.37
USP40-212ENST00000473191 KCNH5Q8NCM2 988 aa23.58■■□□□ 1.37
USP40-212ENST00000473191 USP31Q70CQ4 1352 aa23.57■■□□□ 1.36
USP40-212ENST00000473191 LRRC37A3O60309 1634 aa23.57■■□□□ 1.36
USP40-212ENST00000473191 USP54Q70EL1 1684 aa23.57■■□□□ 1.36
USP40-212ENST00000473191 PSDA5PKW4 1024 aaPredicted RBP23.56■■□□□ 1.36
USP40-212ENST00000473191 WDR17Q8IZU2 1322 aa23.56■■□□□ 1.36
USP40-212ENST00000473191 WNK3Q9BYP7 1800 aa23.55■■□□□ 1.36
USP40-212ENST00000473191 HDGFL2Q7Z4V5 671 aaPredicted RBP23.55■■□□□ 1.36
USP40-212ENST00000473191 PCGF6Q9BYE7 350 aa23.55■■□□□ 1.36
USP40-212ENST00000473191 DISP2A7MBM2 1401 aa23.54■■□□□ 1.36
USP40-212ENST00000473191 EDC4Q6P2E9 1401 aaKnown RBP23.53■■□□□ 1.36
USP40-212ENST00000473191 CAMKK2Q96RR4 588 aa23.53■■□□□ 1.36
USP40-212ENST00000473191 PEAK1Q9H792 1746 aa23.53■■□□□ 1.36
USP40-212ENST00000473191 USP47Q96K76 1375 aa23.52■■□□□ 1.36
USP40-212ENST00000473191 PUS7Q96PZ0 661 aaKnown RBP23.52■■□□□ 1.36
USP40-212ENST00000473191 LTN1O94822 1766 aa23.52■■□□□ 1.36
USP40-212ENST00000473191 APBA3O96018 575 aa23.51■■□□□ 1.35
USP40-212ENST00000473191 OVOS2A0A0J9YW53 1432 aa23.5■■□□□ 1.35
USP40-212ENST00000473191 OVOS2Q6IE36 1432 aa23.5■■□□□ 1.35
USP40-212ENST00000473191 CSB-PGBD3P0DP91 1061 aa23.5■■□□□ 1.35
USP40-212ENST00000473191 TERF2IPQ9NYB0 399 aa23.5■■□□□ 1.35
USP40-212ENST00000473191 FBLN1P23142 703 aa23.49■■□□□ 1.35
USP40-212ENST00000473191 PTF1AQ7RTS3 328 aa23.49■■□□□ 1.35
USP40-212ENST00000473191 DDB1Q16531 1140 aa23.48■■□□□ 1.35
USP40-212ENST00000473191 CARD10Q9BWT7 1032 aa23.48■■□□□ 1.35
USP40-212ENST00000473191 R3HDM1Q15032 1099 aaKnown RBP23.46■■□□□ 1.35
USP40-212ENST00000473191 MARCH10Q8NA82 808 aaPredicted RBP23.46■■□□□ 1.35
USP40-212ENST00000473191 SBF2Q86WG5 1849 aa23.45■■□□□ 1.34
USP40-212ENST00000473191 RREB1Q92766 1687 aa23.45■■□□□ 1.34
USP40-212ENST00000473191 ABCC6O95255 1503 aa23.45■■□□□ 1.34
USP40-212ENST00000473191 ERBB3P21860 1342 aa23.45■■□□□ 1.34
USP40-212ENST00000473191 OVOS2A0A0G2JMS6 1433 aa23.44■■□□□ 1.34
USP40-212ENST00000473191 NUP188Q5SRE5 1749 aa23.43■■□□□ 1.34
USP40-212ENST00000473191 ANKRD36BQ8N2N9 1353 aa23.42■■□□□ 1.34
USP40-212ENST00000473191 NINLQ9Y2I6 1382 aa23.42■■□□□ 1.34
USP40-212ENST00000473191 TMF1P82094 1093 aa23.42■■□□□ 1.34
USP40-212ENST00000473191 ANKRD24Q8TF21 1146 aa23.41■■□□□ 1.34
USP40-212ENST00000473191 NLRP2Q9NX02 1062 aa23.4■■□□□ 1.34
USP40-212ENST00000473191 CCDC7Q96M83 1385 aa23.4■■□□□ 1.34
USP40-212ENST00000473191 LRP5O75197 1615 aa23.38■■□□□ 1.33
USP40-212ENST00000473191 LTV1Q96GA3 475 aaPredicted RBP23.37■■□□□ 1.33
USP40-212ENST00000473191 COG3Q96JB2 828 aa23.37■■□□□ 1.33
USP40-212ENST00000473191 CDCA7Q9BWT1 371 aaPredicted RBP23.37■■□□□ 1.33
USP40-212ENST00000473191 MYOM1P52179 1685 aa23.37■■□□□ 1.33
USP40-212ENST00000473191 PARD3Q8TEW0 1356 aa23.37■■□□□ 1.33
USP40-212ENST00000473191 MAP3K19Q56UN5 1328 aa23.36■■□□□ 1.33
USP40-212ENST00000473191 TNS2Q63HR2 1409 aa23.36■■□□□ 1.33
USP40-212ENST00000473191 EXOC5O00471 708 aa23.36■■□□□ 1.33
USP40-212ENST00000473191 FYB1O15117 783 aa23.36■■□□□ 1.33
USP40-212ENST00000473191 IP6K1Q92551 441 aa23.36■■□□□ 1.33
USP40-212ENST00000473191 GGNBP2Q9H3C7 697 aa23.36■■□□□ 1.33
USP40-212ENST00000473191 CLSPNQ9HAW4 1339 aa23.35■■□□□ 1.33
USP40-212ENST00000473191 SLC24A1O60721 1099 aa23.35■■□□□ 1.33
USP40-212ENST00000473191 TIMELESSQ9UNS1 1208 aa23.34■■□□□ 1.33
USP40-212ENST00000473191 RGPD2P0DJD1 1756 aa23.33■■□□□ 1.33
USP40-212ENST00000473191 KCNQ2O43526 872 aa23.33■■□□□ 1.33
USP40-212ENST00000473191 RRS1Q15050 365 aaKnown RBP23.33■■□□□ 1.33
USP40-212ENST00000473191 CARD14Q9BXL6 1004 aa23.33■■□□□ 1.33
USP40-212ENST00000473191 BCL11BQ9C0K0 894 aaPredicted RBP23.33■■□□□ 1.33
USP40-212ENST00000473191 BCL9O00512 1426 aa23.33■■□□□ 1.32
USP40-212ENST00000473191 IL2RBP14784 551 aa23.32■■□□□ 1.32
USP40-212ENST00000473191 HOXC9P31274 260 aa23.32■■□□□ 1.32
USP40-212ENST00000473191 PROM2Q8N271 834 aa23.32■■□□□ 1.32
USP40-212ENST00000473191 C11orf95C9JLR9 678 aaPredicted RBP23.3■■□□□ 1.32
USP40-212ENST00000473191 ACSBG1Q96GR2 724 aa23.3■■□□□ 1.32
USP40-212ENST00000473191 KIF20BQ96Q89 1820 aa23.29■■□□□ 1.32
USP40-212ENST00000473191 PLSCR1O15162 318 aa23.29■■□□□ 1.32
USP40-212ENST00000473191 ANO8Q9HCE9 1232 aaPredicted RBP23.29■■□□□ 1.32
USP40-212ENST00000473191 RGPD3A6NKT7 1758 aaPredicted RBP23.29■■□□□ 1.32
USP40-212ENST00000473191 RGPD4Q7Z3J3 1758 aa23.29■■□□□ 1.32
USP40-212ENST00000473191 FAM208AQ9UK61 1670 aaKnown RBP23.28■■□□□ 1.32
USP40-212ENST00000473191 AMPHP49418 695 aa23.28■■□□□ 1.32
USP40-212ENST00000473191 CCER1Q8TC90 406 aaPredicted RBP23.27■■□□□ 1.32
USP40-212ENST00000473191 NHSQ6T4R5 1651 aa23.26■■□□□ 1.31
USP40-212ENST00000473191 NSD3Q9BZ95 1437 aa23.25■■□□□ 1.31
USP40-212ENST00000473191 CDCA8Q53HL2 280 aa23.25■■□□□ 1.31
USP40-212ENST00000473191 NBPF14Q5TI25 921 aa23.24■■□□□ 1.31
USP40-212ENST00000473191 POLR3GLQ9BT43 218 aa23.23■■□□□ 1.31
USP40-212ENST00000473191 PDGFDQ9GZP0 370 aaPredicted RBP23.23■■□□□ 1.31
USP40-212ENST00000473191 MEGF6O75095 1541 aa23.23■■□□□ 1.31
USP40-212ENST00000473191 SHANK3Q9BYB0 1731 aa23.22■■□□□ 1.31
USP40-212ENST00000473191 HSP90AB2PQ58FF8 381 aa23.22■■□□□ 1.31
USP40-212ENST00000473191 NBPF6Q5VWK0 638 aa23.22■■□□□ 1.31
USP40-212ENST00000473191 USHBP1Q8N6Y0 703 aa23.22■■□□□ 1.31
USP40-212ENST00000473191 NBPF4Q96M43 638 aa23.22■■□□□ 1.31
USP40-212ENST00000473191 HSPA5P11021 654 aaKnown RBP23.21■■□□□ 1.31
USP40-212ENST00000473191 TXNRD1Q16881 649 aa23.21■■□□□ 1.31
USP40-212ENST00000473191 DDX54Q8TDD1 881 aaKnown RBP23.21■■□□□ 1.31
USP40-212ENST00000473191 RTL1A6NKG5 1358 aa23.2■■□□□ 1.3
USP40-212ENST00000473191 BTAF1O14981 1849 aa23.19■■□□□ 1.3
USP40-212ENST00000473191 EMILIN1Q9Y6C2 1016 aa23.19■■□□□ 1.3
USP40-212ENST00000473191 CASZ1Q86V15 1759 aa23.17■■□□□ 1.3
USP40-212ENST00000473191 EIF4G2P78344 907 aaKnown RBP eCLIP23.15■■□□□ 1.3
USP40-212ENST00000473191 INSRP06213 1382 aa23.14■■□□□ 1.29
USP40-212ENST00000473191 DOT1LQ8TEK3 1739 aa23.13■■□□□ 1.29
USP40-212ENST00000473191 FLT4P35916 1363 aa23.13■■□□□ 1.29
USP40-212ENST00000473191 ZCRB1Q8TBF4 217 aaKnown RBP23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms