RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 ZBBXA8MT70 800 aa11.39□□□□□ -0.59
PRPF40A-206ENST00000471167 ZIC2O95409 532 aaPredicted RBP11.39□□□□□ -0.59
PRPF40A-206ENST00000471167 MCM6Q14566 821 aa11.39□□□□□ -0.59
PRPF40A-206ENST00000471167 INTS6LQ5JSJ4 861 aaKnown RBP11.39□□□□□ -0.59
PRPF40A-206ENST00000471167 SLC10A4Q96EP9 437 aa11.38□□□□□ -0.59
PRPF40A-206ENST00000471167 NDUFB9Q9Y6M9 179 aa11.38□□□□□ -0.59
PRPF40A-206ENST00000471167 ESPNB1AK53 854 aa11.37□□□□□ -0.59
PRPF40A-206ENST00000471167 PPP1R26Q5T8A7 1209 aaPredicted RBP11.36□□□□□ -0.59
PRPF40A-206ENST00000471167 CCDC116Q8IYX3 515 aa11.36□□□□□ -0.59
PRPF40A-206ENST00000471167 PNMA1Q8ND90 353 aa11.36□□□□□ -0.59
PRPF40A-206ENST00000471167 TMEM132AQ24JP5 1023 aa11.35□□□□□ -0.59
PRPF40A-206ENST00000471167 ZNF775Q96BV0 537 aaPredicted RBP11.35□□□□□ -0.59
PRPF40A-206ENST00000471167 TRIM47Q96LD4 638 aa11.35□□□□□ -0.59
PRPF40A-206ENST00000471167 NR1H3Q13133 447 aa11.34□□□□□ -0.59
PRPF40A-206ENST00000471167 ZFP42Q96MM3 310 aa11.34□□□□□ -0.59
PRPF40A-206ENST00000471167 GDPD2Q9HCC8 539 aa11.34□□□□□ -0.59
PRPF40A-206ENST00000471167 TMPRSS4Q9NRS4 437 aa11.34□□□□□ -0.59
PRPF40A-206ENST00000471167 C11orf95C9JLR9 678 aaPredicted RBP11.33□□□□□ -0.6
PRPF40A-206ENST00000471167 CBLBQ13191 982 aa11.33□□□□□ -0.6
PRPF40A-206ENST00000471167 MRPL14Q6P1L8 145 aaKnown RBP11.33□□□□□ -0.6
PRPF40A-206ENST00000471167 CDV3Q9UKY7 258 aaKnown RBP11.33□□□□□ -0.6
PRPF40A-206ENST00000471167 GIGYF1O75420 1035 aaPredicted RBP11.32□□□□□ -0.6
PRPF40A-206ENST00000471167 DZIP3Q86Y13 1208 aaKnown RBP11.32□□□□□ -0.6
PRPF40A-206ENST00000471167 ERVH48-1M5A8F1 160 aa11.31□□□□□ -0.6
PRPF40A-206ENST00000471167 MEIOBQ8N635 442 aa11.31□□□□□ -0.6
PRPF40A-206ENST00000471167 LILRA1O75019 489 aa11.3□□□□□ -0.6
PRPF40A-206ENST00000471167 POM121Q96HA1 1249 aa11.3□□□□□ -0.6
PRPF40A-206ENST00000471167 PCDHB9Q9Y5E1 797 aa11.3□□□□□ -0.6
PRPF40A-206ENST00000471167 EMILIN1Q9Y6C2 1016 aa11.3□□□□□ -0.6
PRPF40A-206ENST00000471167 ADD1P35611 737 aaKnown RBP11.29□□□□□ -0.6
PRPF40A-206ENST00000471167 Q6ZVU0 165 aa11.29□□□□□ -0.6
PRPF40A-206ENST00000471167 KDF1Q8NAX2 398 aaPredicted RBP11.29□□□□□ -0.6
PRPF40A-206ENST00000471167 PURBQ96QR8 312 aaKnown RBP11.29□□□□□ -0.6
PRPF40A-206ENST00000471167 COG6Q9Y2V7 657 aa11.29□□□□□ -0.6
PRPF40A-206ENST00000471167 RAB15P59190 212 aa11.28□□□□□ -0.6
PRPF40A-206ENST00000471167 NBPF20Q3BBV1 942 aa11.27□□□□□ -0.61
PRPF40A-206ENST00000471167 LCE2AQ5TA79 106 aaPredicted RBP11.27□□□□□ -0.61
PRPF40A-206ENST00000471167 ZNF784Q8NCA9 323 aaPredicted RBP11.27□□□□□ -0.61
PRPF40A-206ENST00000471167 LCE2CQ5TA81 110 aa11.26□□□□□ -0.61
PRPF40A-206ENST00000471167 SENP2Q9HC62 589 aa11.26□□□□□ -0.61
PRPF40A-206ENST00000471167 SOBPA7XYQ1 873 aa11.25□□□□□ -0.61
PRPF40A-206ENST00000471167 LINC00528Q8N1L1 170 aa11.25□□□□□ -0.61
PRPF40A-206ENST00000471167 APBB1O00213 710 aa11.24□□□□□ -0.61
PRPF40A-206ENST00000471167 ABL2P42684 1182 aa11.24□□□□□ -0.61
PRPF40A-206ENST00000471167 VAC14Q08AM6 782 aa11.24□□□□□ -0.61
PRPF40A-206ENST00000471167 C6orf118Q5T5N4 469 aa11.24□□□□□ -0.61
PRPF40A-206ENST00000471167 AGBL1Q96MI9 1066 aa11.24□□□□□ -0.61
PRPF40A-206ENST00000471167 TSGA10IPQ3SY00 556 aa11.23□□□□□ -0.61
PRPF40A-206ENST00000471167 KIFC2Q96AC6 838 aa11.23□□□□□ -0.61
PRPF40A-206ENST00000471167 DHX9Q08211 1270 aaKnown RBP11.22□□□□□ -0.61
PRPF40A-206ENST00000471167 SEPT12Q8IYM1 358 aa11.22□□□□□ -0.61
PRPF40A-206ENST00000471167 PHTF2Q8N3S3 785 aa11.22□□□□□ -0.61
PRPF40A-206ENST00000471167 PGPEP1Q9NXJ5 209 aa11.22□□□□□ -0.61
PRPF40A-206ENST00000471167 CEP126Q9P2H0 1117 aa11.22□□□□□ -0.61
PRPF40A-206ENST00000471167 SCTRP47872 440 aa11.21□□□□□ -0.61
PRPF40A-206ENST00000471167 SOS2Q07890 1332 aaPredicted RBP11.2□□□□□ -0.62
PRPF40A-206ENST00000471167 CCDC85AQ96PX6 553 aaPredicted RBP11.2□□□□□ -0.62
PRPF40A-206ENST00000471167 NFX1Q12986 1120 aaKnown RBP11.19□□□□□ -0.62
PRPF40A-206ENST00000471167 SCARF1Q14162 830 aa11.19□□□□□ -0.62
PRPF40A-206ENST00000471167 CYLDQ9NQC7 956 aa11.19□□□□□ -0.62
PRPF40A-206ENST00000471167 SPINT1O43278 529 aa11.18□□□□□ -0.62
PRPF40A-206ENST00000471167 BMP2P12643 396 aa11.18□□□□□ -0.62
PRPF40A-206ENST00000471167 TSEN34Q9BSV6 310 aaKnown RBP11.18□□□□□ -0.62
PRPF40A-206ENST00000471167 CDCA7Q9BWT1 371 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-206ENST00000471167 MCCD1P59942 119 aaPredicted RBP11.17□□□□□ -0.62
PRPF40A-206ENST00000471167 DNMT3LQ9UJW3 386 aa11.17□□□□□ -0.62
PRPF40A-206ENST00000471167 ERVK-9P63128 1117 aa11.16□□□□□ -0.62
PRPF40A-206ENST00000471167 RELBQ01201 579 aa11.16□□□□□ -0.62
PRPF40A-206ENST00000471167 ZNF395Q9H8N7 513 aaPredicted RBP11.16□□□□□ -0.62
PRPF40A-206ENST00000471167 CHIC2Q9UKJ5 165 aa11.16□□□□□ -0.62
PRPF40A-206ENST00000471167 ADH1AP07327 375 aa11.15□□□□□ -0.62
PRPF40A-206ENST00000471167 CTSOP43234 321 aaPredicted RBP11.15□□□□□ -0.62
PRPF40A-206ENST00000471167 FLIIQ13045 1269 aa11.15□□□□□ -0.62
PRPF40A-206ENST00000471167 TREML4Q6UXN2 200 aa11.14□□□□□ -0.63
PRPF40A-206ENST00000471167 INSM2Q96T92 566 aaPredicted RBP11.14□□□□□ -0.63
PRPF40A-206ENST00000471167 PRM3Q9NNZ6 103 aa11.14□□□□□ -0.63
PRPF40A-206ENST00000471167 TERTO14746 1132 aaKnown RBP11.13□□□□□ -0.63
PRPF40A-206ENST00000471167 ADAMTS19Q8TE59 1207 aa11.13□□□□□ -0.63
PRPF40A-206ENST00000471167 OSBPL3Q9H4L5 887 aa11.13□□□□□ -0.63
PRPF40A-206ENST00000471167 ZNF330Q9Y3S2 320 aaPredicted RBP11.13□□□□□ -0.63
PRPF40A-206ENST00000471167 PCDHB11Q9Y5F2 797 aa11.13□□□□□ -0.63
PRPF40A-206ENST00000471167 POM121CA8CG34 1229 aa11.12□□□□□ -0.63
PRPF40A-206ENST00000471167 TRAK2O60296 914 aa11.12□□□□□ -0.63
PRPF40A-206ENST00000471167 PTGIRP43119 386 aa11.12□□□□□ -0.63
PRPF40A-206ENST00000471167 EIF4G2P78344 907 aaKnown RBP eCLIP11.12□□□□□ -0.63
PRPF40A-206ENST00000471167 CLUAP1Q96AJ1 413 aa11.12□□□□□ -0.63
PRPF40A-206ENST00000471167 FIGNL2A6NMB9 653 aa11.11□□□□□ -0.63
PRPF40A-206ENST00000471167 VEGFBP49765 207 aa11.11□□□□□ -0.63
PRPF40A-206ENST00000471167 WASHC4Q2M389 1173 aa11.11□□□□□ -0.63
PRPF40A-206ENST00000471167 RNF20Q5VTR2 975 aa11.11□□□□□ -0.63
PRPF40A-206ENST00000471167 ALG2Q9H553 416 aa11.11□□□□□ -0.63
PRPF40A-206ENST00000471167 TTLL8A6PVC2 850 aa11.1□□□□□ -0.63
PRPF40A-206ENST00000471167 UPP2O95045 317 aa11.1□□□□□ -0.63
PRPF40A-206ENST00000471167 FOXD4L5Q5VV16 416 aaPredicted RBP11.1□□□□□ -0.63
PRPF40A-206ENST00000471167 CC2D2BQ6DHV5 1058 aa11.1□□□□□ -0.63
PRPF40A-206ENST00000471167 FNBP4Q8N3X1 1017 aaPredicted RBP11.1□□□□□ -0.63
PRPF40A-206ENST00000471167 PIK3CDO00329 1044 aa11.09□□□□□ -0.63
PRPF40A-206ENST00000471167 UBTFP17480 764 aaKnown RBP11.09□□□□□ -0.63
PRPF40A-206ENST00000471167 NXF1Q9UBU9 619 aaKnown RBP11.09□□□□□ -0.63
PRPF40A-206ENST00000471167 MAN1A2O60476 641 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms