RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FOSBP53539 338 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 TMEM164Q5U3C3 297 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 ZMIZ1Q9ULJ6 1067 aa6.37□□□□□ -1.39
CCDC88A-209ENST00000456975 UACAQ9BZF9 1416 aa6.36□□□□□ -1.39
CCDC88A-209ENST00000456975 KDM5BQ9UGL1 1544 aa6.36□□□□□ -1.39
CCDC88A-209ENST00000456975 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-209ENST00000456975 RDH13Q8NBN7 331 aa6.36□□□□□ -1.39
CCDC88A-209ENST00000456975 ZBTB3Q9H5J0 574 aa6.36□□□□□ -1.39
CCDC88A-209ENST00000456975 GNEQ9Y223 722 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-209ENST00000456975 PLEKHD1A6NEE1 506 aa6.35□□□□□ -1.39
CCDC88A-209ENST00000456975 NUDT18Q6ZVK8 323 aa6.35□□□□□ -1.39
CCDC88A-209ENST00000456975 WDR7Q9Y4E6 1490 aa6.35□□□□□ -1.39
CCDC88A-209ENST00000456975 IER5LQ5T953 404 aa6.35□□□□□ -1.39
CCDC88A-209ENST00000456975 SULF1Q8IWU6 871 aa6.35□□□□□ -1.39
CCDC88A-209ENST00000456975 ZDHHC16Q969W1 377 aa6.35□□□□□ -1.39
CCDC88A-209ENST00000456975 PIK3CDO00329 1044 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 DNAJC14Q6Y2X3 702 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 TMTC2Q8N394 836 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 RBM27Q9P2N5 1060 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 TSKSQ9UJT2 592 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 CFAP99D6REC4 459 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 SMAPO00193 183 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 FDX1P10109 184 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 COL9A1P20849 921 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 MMP14P50281 582 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 SEMA3FQ13275 785 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 NR6A1Q15406 480 aa6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 PRPF38BQ5VTL8 546 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 ASTLQ6HA08 431 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-209ENST00000456975 ZNF622Q969S3 477 aaKnown RBP eCLIP6.34□□□□□ -1.392e-7■■□□□ 14.1
CCDC88A-209ENST00000456975 KIAA0556O60303 1618 aa6.34□□□□□ -1.4
CCDC88A-209ENST00000456975 MAGI3Q5TCQ9 1506 aa6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 HOXA2O43364 376 aa6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 SEC24BO95487 1268 aa6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 FAM50AQ14320 339 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 KANK4Q5T7N3 995 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 KHSRPQ92945 711 aaKnown RBP eCLIP6.33□□□□□ -1.47e-8■■■■□ 19.6
CCDC88A-209ENST00000456975 SLAIN2Q9P270 581 aa6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 PRDM4Q9UKN5 801 aa6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 GJA5P36382 358 aa6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 LAS1LQ9Y4W2 734 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-209ENST00000456975 CD109Q6YHK3 1445 aa6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 ZNF16P17020 682 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 SERPINB4P48594 390 aa6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 HSP90AB4PQ58FF6 505 aa6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 EXOC8Q8IYI6 725 aa6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 SGSM3Q96HU1 749 aa6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 DISP1Q96F81 1524 aa6.32□□□□□ -1.4
CCDC88A-209ENST00000456975 DEPDC4Q8N2C3 294 aa6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 SYMPKQ92797 1274 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 TMEM134Q9H6X4 195 aa6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 FER1L4A9Z1Z3 1794 aa6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 CTTNBP2Q8WZ74 1663 aa6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 ATP9BO43861 1147 aa6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 CCER1Q8TC90 406 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-209ENST00000456975 PER1O15534 1290 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 NUDT7P0C024 238 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 DNAJB2P25686 324 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 EVX2Q03828 476 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 C3orf67Q6ZVT6 689 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 CCDC125Q86Z20 511 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 FAM9BQ8IZU0 186 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 HELBQ8NG08 1087 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 GIPC2Q8TF65 315 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 BCL2L13Q9BXK5 485 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 NOVA2Q9UNW9 492 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 LOC102724159A0A0B4J2E5 919 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 RRP9O43818 475 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 MTMR2Q13614 643 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 PWP2Q15269 919 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 PNMA3Q9UL41 463 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 UGGT2Q9NYU1 1516 aa6.3□□□□□ -1.4
CCDC88A-209ENST00000456975 PREX1Q8TCU6 1659 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 POTEFA5A3E0 1075 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 ZNF830Q96NB3 372 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 ARHGEF40Q8TER5 1519 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 ARAP3Q8WWN8 1544 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 C6orf229H3BNL8 230 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 HSPA2P54652 639 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 TAGLNQ01995 201 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 CRTC2Q53ET0 693 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 FRMPD1Q5SYB0 1578 aa6.29□□□□□ -1.4
CCDC88A-209ENST00000456975 HDAC5Q9UQL6 1122 aa6.28□□□□□ -1.4
CCDC88A-209ENST00000456975 SSFA2P28290 1259 aa6.27□□□□□ -1.4
CCDC88A-209ENST00000456975 GCGRP47871 477 aa6.27□□□□□ -1.4
CCDC88A-209ENST00000456975 TATDN2Q93075 761 aa6.27□□□□□ -1.4
CCDC88A-209ENST00000456975 ABCA9Q8IUA7 1624 aa6.27□□□□□ -1.41
CCDC88A-209ENST00000456975 SLC10A3P09131 477 aa6.27□□□□□ -1.41
CCDC88A-209ENST00000456975 CALD1Q05682 793 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-209ENST00000456975 KCNH8Q96L42 1107 aa6.27□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L3A6NCW0 530 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L4A6NCW7 530 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 SOWAHDA6NJG2 315 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 AXDND1Q5T1B0 1012 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 B4GALNT3Q6L9W6 998 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L2Q6R6M4 530 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 USP17L1Q7RTZ2 530 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 SLC52A1Q9NWF4 448 aa6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 BIN2Q9UBW5 565 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-209ENST00000456975 RIPOR2Q9Y4F9 1068 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms