RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 COG6Q9Y2V7 657 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 MCM2P49736 904 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 VPS53Q5VIR6 699 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 KIF18AQ8NI77 898 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 POLR3GO15318 223 aaPredicted RBP15.76■□□□□ 0.11
USP40-208ENST00000450966 GABPB1Q06547 395 aaPredicted RBP15.76■□□□□ 0.11
USP40-208ENST00000450966 PRM3Q9NNZ6 103 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 ANKRD30BQ9BXX2 1392 aa15.76■□□□□ 0.11
USP40-208ENST00000450966 KIF7Q2M1P5 1343 aa15.75■□□□□ 0.11
USP40-208ENST00000450966 XRCC6P12956 609 aaKnown RBP eCLIP15.75■□□□□ 0.11
USP40-208ENST00000450966 PTPN14Q15678 1187 aa15.75■□□□□ 0.11
USP40-208ENST00000450966 ROCK1Q13464 1354 aa15.74■□□□□ 0.11
USP40-208ENST00000450966 DDX19BQ9UMR2 479 aa15.74■□□□□ 0.11
USP40-208ENST00000450966 BCCIPQ9P287 314 aaKnown RBP eCLIP15.74■□□□□ 0.11
USP40-208ENST00000450966 PAXBP1Q9Y5B6 917 aa15.74■□□□□ 0.11
USP40-208ENST00000450966 EPRSP07814 1512 aaKnown RBP15.73■□□□□ 0.11
USP40-208ENST00000450966 DNAJC5BQ9UF47 199 aa15.73■□□□□ 0.11
USP40-208ENST00000450966 UTP14CQ5TAP6 766 aaKnown RBP15.73■□□□□ 0.11
USP40-208ENST00000450966 GBP2P32456 591 aaPredicted RBP15.73■□□□□ 0.11
USP40-208ENST00000450966 ESCO1Q5FWF5 840 aa15.73■□□□□ 0.11
USP40-208ENST00000450966 DAPK1P53355 1430 aa15.72■□□□□ 0.11
USP40-208ENST00000450966 MPHOSPH10O00566 681 aaKnown RBP15.72■□□□□ 0.11
USP40-208ENST00000450966 LMAN1P49257 510 aa15.72■□□□□ 0.11
USP40-208ENST00000450966 LUZP1Q86V48 1076 aa15.72■□□□□ 0.11
USP40-208ENST00000450966 NLRP2Q9NX02 1062 aa15.72■□□□□ 0.11
USP40-208ENST00000450966 K7ELQ4 463 aaPredicted RBP15.71■□□□□ 0.11
USP40-208ENST00000450966 AKAP17AQ02040 695 aaKnown RBP15.71■□□□□ 0.11
USP40-208ENST00000450966 ZNF644Q9H582 1327 aaPredicted RBP15.71■□□□□ 0.11
USP40-208ENST00000450966 NLRP6P59044 892 aa15.71■□□□□ 0.11
USP40-208ENST00000450966 MRVI1Q9Y6F6 885 aa15.71■□□□□ 0.11
USP40-208ENST00000450966 DENND4BO75064 1496 aaPredicted RBP15.71■□□□□ 0.1
USP40-208ENST00000450966 SUPT6HQ7KZ85 1726 aaKnown RBP15.7■□□□□ 0.1
USP40-208ENST00000450966 SYTL4Q96C24 671 aaPredicted RBP15.7■□□□□ 0.1
USP40-208ENST00000450966 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.7■□□□□ 0.1
USP40-208ENST00000450966 KIF14Q15058 1648 aa15.7■□□□□ 0.1
USP40-208ENST00000450966 CDC45O75419 566 aa15.7■□□□□ 0.1
USP40-208ENST00000450966 PLEKHO1Q53GL0 409 aaPredicted RBP15.7■□□□□ 0.1
USP40-208ENST00000450966 CCDC141Q6ZP82 1450 aa15.7■□□□□ 0.1
USP40-208ENST00000450966 GOLIM4O00461 696 aa15.7■□□□□ 0.1
USP40-208ENST00000450966 RRAGDQ9NQL2 400 aaPredicted RBP15.7■□□□□ 0.1
USP40-208ENST00000450966 VPS37CA5D8V6 355 aaPredicted RBP15.69■□□□□ 0.1
USP40-208ENST00000450966 SMC2O95347 1197 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 SYNE3Q6ZMZ3 975 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 GBP6Q6ZN66 633 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 MCM3P25205 808 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 PDILTQ8N807 584 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 GAS2L2Q8NHY3 880 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 MAP9Q49MG5 647 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 IQCEQ6IPM2 695 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 OLFM4Q6UX06 510 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 CRACR2AQ9BSW2 395 aa15.69■□□□□ 0.1
USP40-208ENST00000450966 POTEB2H3BUK9 544 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 SMARCE1Q969G3 411 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 ADGRL1O94910 1474 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 A0A1B0GUA9 196 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 API5Q9BZZ5 524 aaKnown RBP15.68■□□□□ 0.1
USP40-208ENST00000450966 GOLGA6L10A0A0M3HER8 536 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 EZRP15311 586 aaKnown RBP15.68■□□□□ 0.1
USP40-208ENST00000450966 MPNDQ8N594 471 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 ZKSCAN5Q9Y2L8 839 aa15.68■□□□□ 0.1
USP40-208ENST00000450966 NEMFO60524 1076 aa15.67■□□□□ 0.1
USP40-208ENST00000450966 C10orf67Q8IYJ2 551 aa15.67■□□□□ 0.1
USP40-208ENST00000450966 ABTB2Q8N961 1025 aa15.67■□□□□ 0.1
USP40-208ENST00000450966 CPLX2Q6PUV4 134 aaKnown RBP15.67■□□□□ 0.1
USP40-208ENST00000450966 TATP17735 454 aaPredicted RBP15.67■□□□□ 0.1
USP40-208ENST00000450966 RBM33Q96EV2 1170 aaKnown RBP15.67■□□□□ 0.1
USP40-208ENST00000450966 GNAI1P63096 354 aa15.67■□□□□ 0.1
USP40-208ENST00000450966 CTDP1Q9Y5B0 961 aaPredicted RBP15.67■□□□□ 0.1
USP40-208ENST00000450966 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.67■□□□□ 0.1
USP40-208ENST00000450966 RAPGEF3O95398 923 aa15.66■□□□□ 0.1
USP40-208ENST00000450966 LRPPRCP42704 1394 aaKnown RBP15.66■□□□□ 0.1
USP40-208ENST00000450966 IBSPP21815 317 aaPredicted RBP15.66■□□□□ 0.1
USP40-208ENST00000450966 ENOX2Q16206 610 aaKnown RBP15.66■□□□□ 0.1
USP40-208ENST00000450966 RILPL2Q969X0 211 aa15.66■□□□□ 0.1
USP40-208ENST00000450966 RRP7AQ9Y3A4 280 aaKnown RBP15.66■□□□□ 0.1
USP40-208ENST00000450966 ZKSCAN1P17029 563 aaPredicted RBP15.66■□□□□ 0.1
USP40-208ENST00000450966 HSP90AB4PQ58FF6 505 aa15.66■□□□□ 0.1
USP40-208ENST00000450966 LRCH2Q5VUJ6 765 aa15.66■□□□□ 0.1
USP40-208ENST00000450966 DMTNQ08495 405 aa15.65■□□□□ 0.1
USP40-208ENST00000450966 CNTLNQ9NXG0 1405 aa15.65■□□□□ 0.1
USP40-208ENST00000450966 KIAA1107Q9UPP5 1409 aa15.65■□□□□ 0.1
USP40-208ENST00000450966 UVSSAQ2YD98 709 aa15.65■□□□□ 0.1
USP40-208ENST00000450966 RUFY2Q8WXA3 655 aa15.65■□□□□ 0.1
USP40-208ENST00000450966 SYCE3A1L190 88 aa15.64■□□□□ 0.09
USP40-208ENST00000450966 PCMTD1Q96MG8 357 aaPredicted RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 SUDS3Q9H7L9 328 aaPredicted RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 C9orf78Q9NZ63 289 aaPredicted RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 TCEAL9Q9UHQ7 104 aa15.64■□□□□ 0.09
USP40-208ENST00000450966 ATAD2Q6PL18 1390 aa15.64■□□□□ 0.09
USP40-208ENST00000450966 PNISRQ8TF01 805 aaKnown RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 V9GYY5 206 aaPredicted RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 ELL2O00472 640 aaPredicted RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 WDR33Q9C0J8 1336 aaKnown RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 SMARCC1Q92922 1105 aaPredicted RBP15.64■□□□□ 0.09
USP40-208ENST00000450966 JAKMIP3Q5VZ66 844 aa15.64■□□□□ 0.09
USP40-208ENST00000450966 ERLIN2O94905 339 aa15.63■□□□□ 0.09
USP40-208ENST00000450966 RNF187Q5TA31 235 aaPredicted RBP15.63■□□□□ 0.09
USP40-208ENST00000450966 WDR66Q8TBY9 1149 aa15.63■□□□□ 0.09
USP40-208ENST00000450966 MICALL1Q8N3F8 863 aa15.63■□□□□ 0.09
USP40-208ENST00000450966 ZNF397Q8NF99 534 aaPredicted RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms