RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 TOM1L2Q6ZVM7 507 aa23.82■■□□□ 1.4
PRPF40A-204ENST00000450303 NFAT5O94916 1531 aa23.82■■□□□ 1.4
PRPF40A-204ENST00000450303 CRB1P82279 1406 aa23.82■■□□□ 1.4
PRPF40A-204ENST00000450303 SLC24A1O60721 1099 aa23.81■■□□□ 1.4
PRPF40A-204ENST00000450303 TMF1P82094 1093 aa23.81■■□□□ 1.4
PRPF40A-204ENST00000450303 PDE3BQ13370 1112 aa23.81■■□□□ 1.4
PRPF40A-204ENST00000450303 THRAP3Q9Y2W1 955 aaKnown RBP23.81■■□□□ 1.4
PRPF40A-204ENST00000450303 EDC4Q6P2E9 1401 aaKnown RBP23.81■■□□□ 1.4
PRPF40A-204ENST00000450303 CSB-PGBD3P0DP91 1061 aa23.78■■□□□ 1.4
PRPF40A-204ENST00000450303 WDR17Q8IZU2 1322 aa23.78■■□□□ 1.4
PRPF40A-204ENST00000450303 USP54Q70EL1 1684 aa23.77■■□□□ 1.4
PRPF40A-204ENST00000450303 RGPD1P0DJD0 1748 aa23.77■■□□□ 1.4
PRPF40A-204ENST00000450303 BAG6P46379 1132 aa23.77■■□□□ 1.4
PRPF40A-204ENST00000450303 FAM196AQ6ZSG2 479 aa23.77■■□□□ 1.4
PRPF40A-204ENST00000450303 TRIM37O94972 964 aa23.76■■□□□ 1.39
PRPF40A-204ENST00000450303 NINLQ9Y2I6 1382 aa23.76■■□□□ 1.39
PRPF40A-204ENST00000450303 EN1Q05925 392 aaPredicted RBP23.75■■□□□ 1.39
PRPF40A-204ENST00000450303 LTN1O94822 1766 aa23.75■■□□□ 1.39
PRPF40A-204ENST00000450303 PARP4Q9UKK3 1724 aaKnown RBP23.74■■□□□ 1.39
PRPF40A-204ENST00000450303 TNS1Q9HBL0 1735 aaKnown RBP23.73■■□□□ 1.39
PRPF40A-204ENST00000450303 OVOS2A0A0J9YW53 1432 aa23.71■■□□□ 1.39
PRPF40A-204ENST00000450303 OVOS2Q6IE36 1432 aa23.71■■□□□ 1.39
PRPF40A-204ENST00000450303 ANKRD36BQ8N2N9 1353 aa23.71■■□□□ 1.39
PRPF40A-204ENST00000450303 CARD10Q9BWT7 1032 aa23.71■■□□□ 1.39
PRPF40A-204ENST00000450303 DDB1Q16531 1140 aa23.7■■□□□ 1.38
PRPF40A-204ENST00000450303 WNK3Q9BYP7 1800 aa23.7■■□□□ 1.38
PRPF40A-204ENST00000450303 FBLN1P23142 703 aa23.69■■□□□ 1.38
PRPF40A-204ENST00000450303 CDCA8Q53HL2 280 aa23.69■■□□□ 1.38
PRPF40A-204ENST00000450303 COG3Q96JB2 828 aa23.69■■□□□ 1.38
PRPF40A-204ENST00000450303 LRRC37A3O60309 1634 aa23.69■■□□□ 1.38
PRPF40A-204ENST00000450303 APBA3O96018 575 aa23.68■■□□□ 1.38
PRPF40A-204ENST00000450303 EZH2Q15910 746 aaKnown RBP23.67■■□□□ 1.38
PRPF40A-204ENST00000450303 NLRP2Q9NX02 1062 aa23.67■■□□□ 1.38
PRPF40A-204ENST00000450303 ABCC6O95255 1503 aa23.67■■□□□ 1.38
PRPF40A-204ENST00000450303 ANKRD24Q8TF21 1146 aa23.66■■□□□ 1.38
PRPF40A-204ENST00000450303 GGNBP2Q9H3C7 697 aa23.65■■□□□ 1.38
PRPF40A-204ENST00000450303 ERBB3P21860 1342 aa23.64■■□□□ 1.38
PRPF40A-204ENST00000450303 PSDA5PKW4 1024 aaPredicted RBP23.64■■□□□ 1.37
PRPF40A-204ENST00000450303 FYB1O15117 783 aa23.64■■□□□ 1.37
PRPF40A-204ENST00000450303 LTV1Q96GA3 475 aaPredicted RBP23.64■■□□□ 1.37
PRPF40A-204ENST00000450303 POLR3GLQ9BT43 218 aa23.64■■□□□ 1.37
PRPF40A-204ENST00000450303 CDCA7Q9BWT1 371 aaPredicted RBP23.64■■□□□ 1.37
PRPF40A-204ENST00000450303 MARCH10Q8NA82 808 aaPredicted RBP23.63■■□□□ 1.37
PRPF40A-204ENST00000450303 CAMKK2Q96RR4 588 aa23.63■■□□□ 1.37
PRPF40A-204ENST00000450303 CCDC7Q96M83 1385 aa23.63■■□□□ 1.37
PRPF40A-204ENST00000450303 PEAK1Q9H792 1746 aa23.62■■□□□ 1.37
PRPF40A-204ENST00000450303 OVOS2A0A0G2JMS6 1433 aa23.62■■□□□ 1.37
PRPF40A-204ENST00000450303 DISP2A7MBM2 1401 aa23.62■■□□□ 1.37
PRPF40A-204ENST00000450303 IP6K1Q92551 441 aa23.62■■□□□ 1.37
PRPF40A-204ENST00000450303 MYOM1P52179 1685 aa23.62■■□□□ 1.37
PRPF40A-204ENST00000450303 MAP3K19Q56UN5 1328 aa23.61■■□□□ 1.37
PRPF40A-204ENST00000450303 EXOC5O00471 708 aa23.61■■□□□ 1.37
PRPF40A-204ENST00000450303 CARD14Q9BXL6 1004 aa23.61■■□□□ 1.37
PRPF40A-204ENST00000450303 HSPA5P11021 654 aaKnown RBP23.6■■□□□ 1.37
PRPF40A-204ENST00000450303 AMPHP49418 695 aa23.6■■□□□ 1.37
PRPF40A-204ENST00000450303 EIF4G2P78344 907 aaKnown RBP eCLIP23.6■■□□□ 1.37
PRPF40A-204ENST00000450303 SBF2Q86WG5 1849 aa23.6■■□□□ 1.37
PRPF40A-204ENST00000450303 KIF20BQ96Q89 1820 aa23.59■■□□□ 1.37
PRPF40A-204ENST00000450303 HOXC9P31274 260 aa23.58■■□□□ 1.37
PRPF40A-204ENST00000450303 RRS1Q15050 365 aaKnown RBP23.58■■□□□ 1.37
PRPF40A-204ENST00000450303 PTF1AQ7RTS3 328 aa23.58■■□□□ 1.37
PRPF40A-204ENST00000450303 C11orf95C9JLR9 678 aaPredicted RBP23.57■■□□□ 1.36
PRPF40A-204ENST00000450303 R3HDM1Q15032 1099 aaKnown RBP23.56■■□□□ 1.36
PRPF40A-204ENST00000450303 NSD3Q9BZ95 1437 aa23.56■■□□□ 1.36
PRPF40A-204ENST00000450303 IL2RBP14784 551 aa23.55■■□□□ 1.36
PRPF40A-204ENST00000450303 RGPD2P0DJD1 1756 aa23.54■■□□□ 1.36
PRPF40A-204ENST00000450303 TNS2Q63HR2 1409 aa23.52■■□□□ 1.36
PRPF40A-204ENST00000450303 PARD3Q8TEW0 1356 aa23.52■■□□□ 1.36
PRPF40A-204ENST00000450303 RREB1Q92766 1687 aa23.51■■□□□ 1.35
PRPF40A-204ENST00000450303 BCL11BQ9C0K0 894 aaPredicted RBP23.51■■□□□ 1.35
PRPF40A-204ENST00000450303 NUP188Q5SRE5 1749 aa23.5■■□□□ 1.35
PRPF40A-204ENST00000450303 FAM208AQ9UK61 1670 aaKnown RBP23.5■■□□□ 1.35
PRPF40A-204ENST00000450303 KAT6BQ8WYB5 2073 aa23.49■■□□□ 1.35
PRPF40A-204ENST00000450303 ACSBG1Q96GR2 724 aa23.49■■□□□ 1.35
PRPF40A-204ENST00000450303 KCNQ2O43526 872 aa23.48■■□□□ 1.35
PRPF40A-204ENST00000450303 RTL1A6NKG5 1358 aa23.47■■□□□ 1.35
PRPF40A-204ENST00000450303 BCL9O00512 1426 aa23.47■■□□□ 1.35
PRPF40A-204ENST00000450303 PLSCR1O15162 318 aa23.46■■□□□ 1.35
PRPF40A-204ENST00000450303 HSP90AB2PQ58FF8 381 aa23.46■■□□□ 1.35
PRPF40A-204ENST00000450303 USHBP1Q8N6Y0 703 aa23.46■■□□□ 1.35
PRPF40A-204ENST00000450303 DDX54Q8TDD1 881 aaKnown RBP23.46■■□□□ 1.35
PRPF40A-204ENST00000450303 NBPF14Q5TI25 921 aa23.45■■□□□ 1.34
PRPF40A-204ENST00000450303 NBPF6Q5VWK0 638 aa23.45■■□□□ 1.34
PRPF40A-204ENST00000450303 NBPF4Q96M43 638 aa23.45■■□□□ 1.34
PRPF40A-204ENST00000450303 EMILIN1Q9Y6C2 1016 aa23.45■■□□□ 1.34
PRPF40A-204ENST00000450303 CGNL1Q0VF96 1302 aa23.43■■□□□ 1.34
PRPF40A-204ENST00000450303 PPM1GO15355 546 aaPredicted RBP23.43■■□□□ 1.34
PRPF40A-204ENST00000450303 PANK3Q9H999 370 aa23.43■■□□□ 1.34
PRPF40A-204ENST00000450303 SRCAPQ6ZRS2 3230 aa23.43■■□□□ 1.34
PRPF40A-204ENST00000450303 PROM2Q8N271 834 aa23.42■■□□□ 1.34
PRPF40A-204ENST00000450303 MAP2P11137 1827 aaKnown RBP23.41■■□□□ 1.34
PRPF40A-204ENST00000450303 RGPD3A6NKT7 1758 aaPredicted RBP23.41■■□□□ 1.34
PRPF40A-204ENST00000450303 RGPD4Q7Z3J3 1758 aa23.41■■□□□ 1.34
PRPF40A-204ENST00000450303 INSRP06213 1382 aa23.4■■□□□ 1.34
PRPF40A-204ENST00000450303 FLT4P35916 1363 aa23.4■■□□□ 1.34
PRPF40A-204ENST00000450303 NHSQ6T4R5 1651 aa23.4■■□□□ 1.34
PRPF40A-204ENST00000450303 SMG6Q86US8 1419 aaKnown RBP23.4■■□□□ 1.34
PRPF40A-204ENST00000450303 MEGF6O75095 1541 aa23.39■■□□□ 1.34
PRPF40A-204ENST00000450303 TNNT2P45379 298 aaPredicted RBP23.39■■□□□ 1.33
PRPF40A-204ENST00000450303 LRP5O75197 1615 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms