RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PDCP20941 246 aa14.35□□□□□ -0.11
CCDC88A-207ENST00000436346 FKBP4Q02790 459 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 MAP4K4O95819 1239 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 ACBD3Q9H3P7 528 aa14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 ZNF396Q96N95 335 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 NOB1Q9ULX3 412 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 RSPH6AQ9H0K4 717 aa14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 ARGLU1Q9NWB6 273 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 CAMSAP2Q08AD1 1489 aa14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 MPHOSPH10O00566 681 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 HSP90B2PQ58FF3 399 aa14.34□□□□□ -0.11
CCDC88A-207ENST00000436346 NASPP49321 788 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-207ENST00000436346 ZHX3Q9H4I2 956 aa14.33□□□□□ -0.11
CCDC88A-207ENST00000436346 TRIM22Q8IYM9 498 aa14.33□□□□□ -0.11
CCDC88A-207ENST00000436346 IGF1RP08069 1367 aa14.33□□□□□ -0.11
CCDC88A-207ENST00000436346 ARHGEF11O15085 1522 aa14.33□□□□□ -0.12
CCDC88A-207ENST00000436346 AAMPQ13685 434 aa14.33□□□□□ -0.12
CCDC88A-207ENST00000436346 BICDL1Q6ZP65 573 aa14.33□□□□□ -0.12
CCDC88A-207ENST00000436346 SMARCE1Q969G3 411 aa14.33□□□□□ -0.12
CCDC88A-207ENST00000436346 STIM1Q13586 685 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 ANKLE2Q86XL3 938 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 NUP133Q8WUM0 1156 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 SULT6B1Q6IMI4 303 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 STAC3Q96MF2 364 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 TRIM5Q9C035 493 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 SLC4A2P04920 1241 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 SKIDA1Q1XH10 827 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 ADAMTS8Q9UP79 889 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 STK3Q13188 491 aa14.32□□□□□ -0.12
CCDC88A-207ENST00000436346 TDO2P48775 406 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 TWISTNBQ3B726 338 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 FMNL2Q96PY5 1086 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 CHMP5Q9NZZ3 219 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 ANKIB1Q9P2G1 1089 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 ZSCAN29Q8IWY8 852 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 ADGBQ8N7X0 1667 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 CCT4P50991 539 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 TSR2Q969E8 191 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 ARAP1Q96P48 1450 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 ZPR1O75312 459 aa14.31□□□□□ -0.12
CCDC88A-207ENST00000436346 IBSPP21815 317 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 AACSQ86V21 672 aa14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 STK38Q15208 465 aa14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 RRS1Q15050 365 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 TCP11L2Q8N4U5 519 aa14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 FAM13BQ9NYF5 915 aa14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 CFAP70Q5T0N1 1121 aa14.3□□□□□ -0.12
CCDC88A-207ENST00000436346 JMYQ8N9B5 988 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 LRRCC1Q9C099 1032 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 CABP1Q9NZU7 370 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 FILIP1LQ4L180 1135 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 KIAA1107Q9UPP5 1409 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 MAP7D2Q96T17 732 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 POLA1P09884 1462 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 FIBPO43427 364 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 SEPT11Q9NVA2 429 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 NEK4P51957 841 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 DCTN1Q14203 1278 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 HFM1A2PYH4 1435 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 DAPK1P53355 1430 aa14.29□□□□□ -0.12
CCDC88A-207ENST00000436346 RAPGEF6Q8TEU7 1601 aa14.28□□□□□ -0.12
CCDC88A-207ENST00000436346 CAVIN1Q6NZI2 390 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-207ENST00000436346 ZNHIT6Q9NWK9 470 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-207ENST00000436346 CCDC39Q9UFE4 941 aa14.28□□□□□ -0.12
CCDC88A-207ENST00000436346 ME1P48163 572 aa14.28□□□□□ -0.12
CCDC88A-207ENST00000436346 LETM1O95202 739 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-207ENST00000436346 ZNF76P36508 570 aa14.27□□□□□ -0.12
CCDC88A-207ENST00000436346 PIBF1Q8WXW3 757 aa14.27□□□□□ -0.12
CCDC88A-207ENST00000436346 TRIM21P19474 475 aaKnown RBP14.27□□□□□ -0.13
CCDC88A-207ENST00000436346 IGHMBP2P38935 993 aaKnown RBP14.27□□□□□ -0.13
CCDC88A-207ENST00000436346 UBAC1Q9BSL1 405 aa14.27□□□□□ -0.13
CCDC88A-207ENST00000436346 LRP2BPQ9P2M1 347 aa14.27□□□□□ -0.13
CCDC88A-207ENST00000436346 CYP46A1Q9Y6A2 500 aa14.27□□□□□ -0.13
CCDC88A-207ENST00000436346 CHMP4BP1P59074 171 aa14.27□□□□□ -0.13
CCDC88A-207ENST00000436346 CCDC85AQ96PX6 553 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 PDCL3Q9H2J4 239 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 SEC63Q9UGP8 760 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 ANKRD1Q15327 319 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 TANGO6Q9C0B7 1094 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 ZNF652Q9Y2D9 606 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 NSD3Q9BZ95 1437 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 PIP4K2AP48426 406 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 ZSCAN25Q6NSZ9 544 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 RNF214Q8ND24 703 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 CCP110O43303 1012 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 CDKL5O76039 1030 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 PPP2R1AP30153 589 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 SOGA3Q5TF21 947 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 DEF6Q9H4E7 631 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 NOM1Q5C9Z4 860 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 AKNAQ7Z591 1439 aa14.26□□□□□ -0.13
CCDC88A-207ENST00000436346 RAI14Q9P0K7 980 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 TSPY26PQ9H489 355 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 ERLIN2O94905 339 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 RAPGEF3O95398 923 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 MYO5CQ9NQX4 1742 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 ZRSR2Q15696 482 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 TTLL12Q14166 644 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 SEPT7Q16181 437 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms