RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 CCDC116Q8IYX3 515 aa7.47□□□□□ -1.21
CLK1-204ENST00000432425 ZIC2O95409 532 aaPredicted RBP7.46□□□□□ -1.22
CLK1-204ENST00000432425 FBXO45P0C2W1 286 aa7.46□□□□□ -1.22
CLK1-204ENST00000432425 GMPR2Q9P2T1 348 aaKnown RBP7.46□□□□□ -1.22
CLK1-204ENST00000432425 ZNF330Q9Y3S2 320 aaPredicted RBP7.46□□□□□ -1.22
CLK1-204ENST00000432425 NR1H3Q13133 447 aa7.45□□□□□ -1.22
CLK1-204ENST00000432425 ITPKCQ96DU7 683 aa7.45□□□□□ -1.22
CLK1-204ENST00000432425 SENP2Q9HC62 589 aa7.45□□□□□ -1.22
CLK1-204ENST00000432425 PCDHB9Q9Y5E1 797 aa7.45□□□□□ -1.22
CLK1-204ENST00000432425 EMILIN1Q9Y6C2 1016 aa7.45□□□□□ -1.22
CLK1-204ENST00000432425 POTECB2RU33 542 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 ZNF592Q92610 1267 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 TBC1D2BQ9UPU7 963 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 C11orf95C9JLR9 678 aaPredicted RBP7.44□□□□□ -1.22
CLK1-204ENST00000432425 BMP1P13497 986 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 DHX9Q08211 1270 aaKnown RBP7.44□□□□□ -1.22
CLK1-204ENST00000432425 MCM6Q14566 821 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 KLF16Q9BXK1 252 aaPredicted RBP7.44□□□□□ -1.22
CLK1-204ENST00000432425 ZFAND3Q9H8U3 227 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 PGPEP1Q9NXJ5 209 aa7.44□□□□□ -1.22
CLK1-204ENST00000432425 RAB15P59190 212 aa7.43□□□□□ -1.22
CLK1-204ENST00000432425 INTS6LQ5JSJ4 861 aaKnown RBP7.43□□□□□ -1.22
CLK1-204ENST00000432425 KIFC2Q96AC6 838 aa7.43□□□□□ -1.22
CLK1-204ENST00000432425 GPR37L1O60883 481 aa7.42□□□□□ -1.22
CLK1-204ENST00000432425 SCARF1Q14162 830 aa7.42□□□□□ -1.22
CLK1-204ENST00000432425 PPP1R26Q5T8A7 1209 aaPredicted RBP7.42□□□□□ -1.22
CLK1-204ENST00000432425 TRIM46Q7Z4K8 759 aa7.42□□□□□ -1.22
CLK1-204ENST00000432425 MCCD1P59942 119 aaPredicted RBP7.41□□□□□ -1.22
CLK1-204ENST00000432425 MRPL14Q6P1L8 145 aaKnown RBP7.41□□□□□ -1.22
CLK1-204ENST00000432425 UPP2O95045 317 aa7.41□□□□□ -1.22
CLK1-204ENST00000432425 ABL2P42684 1182 aa7.41□□□□□ -1.22
CLK1-204ENST00000432425 TRIM47Q96LD4 638 aa7.41□□□□□ -1.22
CLK1-204ENST00000432425 GDPD2Q9HCC8 539 aa7.41□□□□□ -1.22
CLK1-204ENST00000432425 ESPNB1AK53 854 aa7.4□□□□□ -1.23
CLK1-204ENST00000432425 FLIIQ13045 1269 aa7.4□□□□□ -1.23
CLK1-204ENST00000432425 SEPT12Q8IYM1 358 aa7.39□□□□□ -1.23
CLK1-204ENST00000432425 MEIOBQ8N635 442 aa7.39□□□□□ -1.23
CLK1-204ENST00000432425 TRIM52Q96A61 297 aa7.39□□□□□ -1.23
CLK1-204ENST00000432425 PURBQ96QR8 312 aaKnown RBP7.39□□□□□ -1.23
CLK1-204ENST00000432425 ZFP42Q96MM3 310 aa7.38□□□□□ -1.23
CLK1-204ENST00000432425 ERVH48-1M5A8F1 160 aa7.38□□□□□ -1.23
CLK1-204ENST00000432425 SNRPBP14678 240 aaKnown RBP7.38□□□□□ -1.23
CLK1-204ENST00000432425 C6orf118Q5T5N4 469 aa7.38□□□□□ -1.23
CLK1-204ENST00000432425 RNF20Q5VTR2 975 aa7.38□□□□□ -1.23
CLK1-204ENST00000432425 LINC00528Q8N1L1 170 aa7.38□□□□□ -1.23
CLK1-204ENST00000432425 TMPRSS4Q9NRS4 437 aa7.38□□□□□ -1.23
CLK1-204ENST00000432425 GIGYF1O75420 1035 aaPredicted RBP7.37□□□□□ -1.23
CLK1-204ENST00000432425 BMP2P12643 396 aa7.37□□□□□ -1.23
CLK1-204ENST00000432425 EIF4G2P78344 907 aaKnown RBP eCLIP7.37□□□□□ -1.23
CLK1-204ENST00000432425 IRF5Q13568 498 aa7.37□□□□□ -1.23
CLK1-204ENST00000432425 TSEN34Q9BSV6 310 aaKnown RBP7.37□□□□□ -1.23
CLK1-204ENST00000432425 RAD21O60216 631 aa7.36□□□□□ -1.23
CLK1-204ENST00000432425 UBTFP17480 764 aaKnown RBP7.36□□□□□ -1.23
CLK1-204ENST00000432425 CBLBQ13191 982 aa7.36□□□□□ -1.23
CLK1-204ENST00000432425 WASHC4Q2M389 1173 aa7.36□□□□□ -1.23
CLK1-204ENST00000432425 CCDC125Q86Z20 511 aa7.36□□□□□ -1.23
CLK1-204ENST00000432425 WWC1Q8IX03 1113 aa7.36□□□□□ -1.23
CLK1-204ENST00000432425 ZNF784Q8NCA9 323 aaPredicted RBP7.36□□□□□ -1.23
CLK1-204ENST00000432425 COG6Q9Y2V7 657 aa7.36□□□□□ -1.23
CLK1-204ENST00000432425 VAC14Q08AM6 782 aa7.35□□□□□ -1.23
CLK1-204ENST00000432425 Q6ZVU0 165 aa7.35□□□□□ -1.23
CLK1-204ENST00000432425 ZNF775Q96BV0 537 aaPredicted RBP7.35□□□□□ -1.23
CLK1-204ENST00000432425 CYLDQ9NQC7 956 aa7.34□□□□□ -1.23
CLK1-204ENST00000432425 ADH1AP07327 375 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 CEP126Q9P2H0 1117 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 PCDHB11Q9Y5F2 797 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 MAN1A2O60476 641 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 LILRA1O75019 489 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 RELBQ01201 579 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 POM121Q96HA1 1249 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 AGBL1Q96MI9 1066 aa7.32□□□□□ -1.24
CLK1-204ENST00000432425 ESF1Q9H501 851 aaKnown RBP7.32□□□□□ -1.24
CLK1-204ENST00000432425 SOX11P35716 441 aa7.31□□□□□ -1.24
CLK1-204ENST00000432425 SEMA3FQ13275 785 aa7.31□□□□□ -1.24
CLK1-204ENST00000432425 SPINT1O43278 529 aa7.3□□□□□ -1.24
CLK1-204ENST00000432425 SLFNL1Q499Z3 407 aa7.3□□□□□ -1.24
CLK1-204ENST00000432425 CC2D2BQ6DHV5 1058 aa7.3□□□□□ -1.24
CLK1-204ENST00000432425 SOS2Q07890 1332 aaPredicted RBP7.3□□□□□ -1.24
CLK1-204ENST00000432425 TTLL8A6PVC2 850 aa7.29□□□□□ -1.24
CLK1-204ENST00000432425 ADD1P35611 737 aaKnown RBP7.29□□□□□ -1.24
CLK1-204ENST00000432425 SOBPA7XYQ1 873 aa7.28□□□□□ -1.24
CLK1-204ENST00000432425 ERVK-9P63128 1117 aa7.28□□□□□ -1.24
CLK1-204ENST00000432425 RNF135Q8IUD6 432 aa7.28□□□□□ -1.24
CLK1-204ENST00000432425 ZNF395Q9H8N7 513 aaPredicted RBP7.28□□□□□ -1.24
CLK1-204ENST00000432425 ATP5J2-PTCD1G3V325 749 aa7.28□□□□□ -1.24
CLK1-204ENST00000432425 PTGIRP43119 386 aa7.28□□□□□ -1.24
CLK1-204ENST00000432425 CYP2U1Q7Z449 544 aa7.28□□□□□ -1.24
CLK1-204ENST00000432425 POLMQ9NP87 494 aaPredicted RBP7.28□□□□□ -1.24
CLK1-204ENST00000432425 MYCP01106 439 aaPredicted RBP7.27□□□□□ -1.25
CLK1-204ENST00000432425 CCDC85AQ96PX6 553 aaPredicted RBP7.27□□□□□ -1.25
CLK1-204ENST00000432425 INSM2Q96T92 566 aaPredicted RBP7.27□□□□□ -1.25
CLK1-204ENST00000432425 DOLKQ9UPQ8 538 aa7.27□□□□□ -1.25
CLK1-204ENST00000432425 TERTO14746 1132 aaKnown RBP7.26□□□□□ -1.25
CLK1-204ENST00000432425 SCTRP47872 440 aa7.26□□□□□ -1.25
CLK1-204ENST00000432425 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.26□□□□□ -1.251e-6■■□□□ 12.3
CLK1-204ENST00000432425 NXF1Q9UBU9 619 aaKnown RBP7.26□□□□□ -1.25
CLK1-204ENST00000432425 DNMT3LQ9UJW3 386 aa7.26□□□□□ -1.25
CLK1-204ENST00000432425 FIGNL2A6NMB9 653 aa7.25□□□□□ -1.25
CLK1-204ENST00000432425 CTSOP43234 321 aaPredicted RBP7.25□□□□□ -1.25
CLK1-204ENST00000432425 WFS1O76024 890 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms