RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CABP1Q9NZU7 370 aa18.28■□□□□ 0.52
PTPRF-206ENST00000429895 ANKRD50Q9ULJ7 1429 aa18.27■□□□□ 0.52
PTPRF-206ENST00000429895 RAD54L2Q9Y4B4 1467 aa18.27■□□□□ 0.52
PTPRF-206ENST00000429895 PDCP20941 246 aa18.27■□□□□ 0.52
PTPRF-206ENST00000429895 LRRCC1Q9C099 1032 aa18.27■□□□□ 0.52
PTPRF-206ENST00000429895 ZNHIT6Q9NWK9 470 aaKnown RBP18.27■□□□□ 0.52
PTPRF-206ENST00000429895 TRAK2O60296 914 aa18.27■□□□□ 0.51
PTPRF-206ENST00000429895 RAI14Q9P0K7 980 aa18.27■□□□□ 0.51
PTPRF-206ENST00000429895 ME1P48163 572 aa18.26■□□□□ 0.51
PTPRF-206ENST00000429895 AXDND1Q5T1B0 1012 aaPredicted RBP18.26■□□□□ 0.51
PTPRF-206ENST00000429895 AACSQ86V21 672 aa18.26■□□□□ 0.51
PTPRF-206ENST00000429895 AAMPQ13685 434 aa18.26■□□□□ 0.51
PTPRF-206ENST00000429895 CALRP27797 417 aaKnown RBP18.26■□□□□ 0.51
PTPRF-206ENST00000429895 SRCIN1Q9C0H9 1055 aa18.26■□□□□ 0.51
PTPRF-206ENST00000429895 TDO2P48775 406 aa18.25■□□□□ 0.51
PTPRF-206ENST00000429895 MPNDQ8N594 471 aa18.25■□□□□ 0.51
PTPRF-206ENST00000429895 CCDC191Q8NCU4 936 aa18.25■□□□□ 0.51
PTPRF-206ENST00000429895 FYCO1Q9BQS8 1478 aa18.25■□□□□ 0.51
PTPRF-206ENST00000429895 RRBP1Q9P2E9 1410 aaKnown RBP18.25■□□□□ 0.51
PTPRF-206ENST00000429895 FANCIQ9NVI1 1328 aa18.25■□□□□ 0.51
PTPRF-206ENST00000429895 SLC12A5Q9H2X9 1139 aa18.25■□□□□ 0.51
PTPRF-206ENST00000429895 ATAD2BQ9ULI0 1458 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 FGD6Q6ZV73 1430 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 BCAR3O75815 825 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 PIP4K2AP48426 406 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-206ENST00000429895 ZNF76P36508 570 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 USP5P45974 858 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 MRE11P49959 708 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 JMYQ8N9B5 988 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 GCC1Q96CN9 775 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 STIM1Q13586 685 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 RABEP1Q15276 862 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 PPFIBP1Q86W92 1011 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 PRDM11Q9NQV5 511 aa18.24■□□□□ 0.51
PTPRF-206ENST00000429895 BTBD11A6QL63 1104 aa18.23■□□□□ 0.51
PTPRF-206ENST00000429895 STAC3Q96MF2 364 aa18.23■□□□□ 0.51
PTPRF-206ENST00000429895 CCT4P50991 539 aaKnown RBP18.23■□□□□ 0.51
PTPRF-206ENST00000429895 CHMP4BP1P59074 171 aa18.23■□□□□ 0.51
PTPRF-206ENST00000429895 RRS1Q15050 365 aaKnown RBP18.23■□□□□ 0.51
PTPRF-206ENST00000429895 FAM177A1Q8N128 213 aaPredicted RBP18.23■□□□□ 0.51
PTPRF-206ENST00000429895 SEPT7Q16181 437 aaKnown RBP18.22■□□□□ 0.51
PTPRF-206ENST00000429895 MBD3O95983 291 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 CCDC181Q5TID7 509 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 ZSCAN25Q6NSZ9 544 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 TSPYL1Q9H0U9 437 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 MCM2P49736 904 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 THEMISQ8N1K5 641 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-206ENST00000429895 SLC26A8Q96RN1 970 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 TNMDQ9H2S6 317 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 FGD5Q6ZNL6 1462 aa18.22■□□□□ 0.51
PTPRF-206ENST00000429895 ERLIN2O94905 339 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 PLCD4Q9BRC7 762 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 BRD4O60885 1362 aaPredicted RBP18.21■□□□□ 0.51
PTPRF-206ENST00000429895 AQRO60306 1485 aaKnown RBP eCLIP18.21■□□□□ 0.511e-6■■■■■ 36.8
PTPRF-206ENST00000429895 NBPF1Q3BBV0 1214 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 DHX37Q8IY37 1157 aaKnown RBP18.21■□□□□ 0.51
PTPRF-206ENST00000429895 LRP2BPQ9P2M1 347 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 PNISRQ8TF01 805 aaKnown RBP18.21■□□□□ 0.51
PTPRF-206ENST00000429895 UBAC1Q9BSL1 405 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 NOL7Q9UMY1 257 aaKnown RBP18.21■□□□□ 0.51
PTPRF-206ENST00000429895 CUX1P39880 1505 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 CCP110O43303 1012 aa18.21■□□□□ 0.51
PTPRF-206ENST00000429895 CWC27Q6UX04 472 aaKnown RBP18.2■□□□□ 0.5
PTPRF-206ENST00000429895 ZC3H6P61129 1189 aaKnown RBP18.19■□□□□ 0.5
PTPRF-206ENST00000429895 ANKRD1Q15327 319 aa18.19■□□□□ 0.5
PTPRF-206ENST00000429895 ENOX2Q16206 610 aaKnown RBP18.19■□□□□ 0.5
PTPRF-206ENST00000429895 SRGAP3O43295 1099 aa18.19■□□□□ 0.5
PTPRF-206ENST00000429895 IL1RAPL2Q9NP60 686 aa18.19■□□□□ 0.5
PTPRF-206ENST00000429895 DACH1Q9UI36 760 aa18.19■□□□□ 0.5
PTPRF-206ENST00000429895 IDH1O75874 414 aaKnown RBP18.19■□□□□ 0.5
PTPRF-206ENST00000429895 NEBLO76041 1014 aa18.19■□□□□ 0.5
PTPRF-206ENST00000429895 CT47B1P0C2W7 299 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-206ENST00000429895 LARP1BQ659C4 914 aaKnown RBP18.19■□□□□ 0.5
PTPRF-206ENST00000429895 CENPHQ9H3R5 247 aa18.18■□□□□ 0.5
PTPRF-206ENST00000429895 AEBP1Q8IUX7 1158 aa18.18■□□□□ 0.5
PTPRF-206ENST00000429895 IGHMBP2P38935 993 aaKnown RBP18.17■□□□□ 0.5
PTPRF-206ENST00000429895 JAKMIP1Q96N16 626 aaKnown RBP18.17■□□□□ 0.5
PTPRF-206ENST00000429895 PDRG1Q9NUG6 133 aa18.17■□□□□ 0.5
PTPRF-206ENST00000429895 CEP126Q9P2H0 1117 aa18.17■□□□□ 0.5
PTPRF-206ENST00000429895 ABCF2Q9UG63 623 aa18.17■□□□□ 0.5
PTPRF-206ENST00000429895 ZRSR2Q15696 482 aaKnown RBP18.17■□□□□ 0.5
PTPRF-206ENST00000429895 TAX1BP1Q86VP1 789 aa18.17■□□□□ 0.5
PTPRF-206ENST00000429895 SSR1P43307 286 aaKnown RBP18.17■□□□□ 0.5
PTPRF-206ENST00000429895 GOLGA6L10A6NI86 522 aa18.16■□□□□ 0.5
PTPRF-206ENST00000429895 ZNF692Q9BU19 519 aaPredicted RBP18.16■□□□□ 0.5
PTPRF-206ENST00000429895 RTEL1-TNFRSF6BF6WH68 1400 aa18.16■□□□□ 0.5
PTPRF-206ENST00000429895 CCDC192P0DO97 292 aa18.16■□□□□ 0.5
PTPRF-206ENST00000429895 LUC7LQ9NQ29 371 aaKnown RBP18.16■□□□□ 0.5
PTPRF-206ENST00000429895 BMP2KQ9NSY1 1161 aaPredicted RBP18.16■□□□□ 0.5
PTPRF-206ENST00000429895 FAM193AP78312 1265 aa18.15■□□□□ 0.5
PTPRF-206ENST00000429895 CWC15Q9P013 229 aaKnown RBP18.15■□□□□ 0.5
PTPRF-206ENST00000429895 BLOC1S2Q6QNY1 142 aa18.15■□□□□ 0.5
PTPRF-206ENST00000429895 MIS18AQ9NYP9 233 aa18.15■□□□□ 0.5
PTPRF-206ENST00000429895 ANKLE2Q86XL3 938 aa18.14■□□□□ 0.5
PTPRF-206ENST00000429895 NUTM1Q86Y26 1132 aa18.14■□□□□ 0.49
PTPRF-206ENST00000429895 CCDC97Q96F63 343 aaPredicted RBP18.14■□□□□ 0.49
PTPRF-206ENST00000429895 KRT85P78386 507 aa18.14■□□□□ 0.49
PTPRF-206ENST00000429895 ANKRD18AQ8IVF6 992 aa18.14■□□□□ 0.49
PTPRF-206ENST00000429895 SPATA32Q96LK8 384 aa18.14■□□□□ 0.49
PTPRF-206ENST00000429895 CDKL5O76039 1030 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms