RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 TSPYL1Q9H0U9 437 aa17.31■□□□□ 0.36
PTPRU-204ENST00000428026 ATP2B1P20020 1258 aa17.31■□□□□ 0.36
PTPRU-204ENST00000428026 AXDND1Q5T1B0 1012 aaPredicted RBP17.31■□□□□ 0.36
PTPRU-204ENST00000428026 NAIPQ13075 1403 aa17.31■□□□□ 0.36
PTPRU-204ENST00000428026 BRPF1P55201 1214 aaPredicted RBP17.31■□□□□ 0.36
PTPRU-204ENST00000428026 HSP90AB4PQ58FF6 505 aa17.31■□□□□ 0.36
PTPRU-204ENST00000428026 UBTFL1P0CB47 393 aaPredicted RBP17.31■□□□□ 0.36
PTPRU-204ENST00000428026 EXOSC9Q06265 439 aaKnown RBP17.31■□□□□ 0.36
PTPRU-204ENST00000428026 RRP9O43818 475 aaKnown RBP17.31■□□□□ 0.36
PTPRU-204ENST00000428026 ERCC4Q92889 916 aaPredicted RBP17.31■□□□□ 0.36
PTPRU-204ENST00000428026 AIMP1Q12904 312 aaKnown RBP17.3■□□□□ 0.36
PTPRU-204ENST00000428026 FSD1Q9BTV5 496 aa17.3■□□□□ 0.36
PTPRU-204ENST00000428026 DDX58O95786 925 aaKnown RBP17.3■□□□□ 0.36
PTPRU-204ENST00000428026 CCDC112Q8NEF3 446 aa17.3■□□□□ 0.36
PTPRU-204ENST00000428026 CNTROBQ8N137 903 aa17.3■□□□□ 0.36
PTPRU-204ENST00000428026 TCEAL9Q9UHQ7 104 aa17.3■□□□□ 0.36
PTPRU-204ENST00000428026 MCM4P33991 863 aa17.29■□□□□ 0.36
PTPRU-204ENST00000428026 ZC3H6P61129 1189 aaKnown RBP17.29■□□□□ 0.36
PTPRU-204ENST00000428026 ATP10BO94823 1461 aa17.29■□□□□ 0.36
PTPRU-204ENST00000428026 PSMA5P28066 241 aa17.29■□□□□ 0.36
PTPRU-204ENST00000428026 KIF21AQ7Z4S6 1674 aa17.29■□□□□ 0.36
PTPRU-204ENST00000428026 DDX54Q8TDD1 881 aaKnown RBP17.29■□□□□ 0.36
PTPRU-204ENST00000428026 K7ELQ4 463 aaPredicted RBP17.29■□□□□ 0.36
PTPRU-204ENST00000428026 FAM177A1Q8N128 213 aaPredicted RBP17.28■□□□□ 0.36
PTPRU-204ENST00000428026 AMOTL2Q9Y2J4 779 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 ERICH4A6NGS2 130 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 SURF6O75683 361 aaKnown RBP17.28■□□□□ 0.36
PTPRU-204ENST00000428026 CCDC184Q52MB2 194 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 PRDM10Q9NQV6 1147 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 OFD1O75665 1012 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 CCDC191Q8NCU4 936 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 NUDT16Q96DE0 195 aaKnown RBP17.28■□□□□ 0.36
PTPRU-204ENST00000428026 AMOTL1Q8IY63 956 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 TSR2Q969E8 191 aaKnown RBP17.28■□□□□ 0.36
PTPRU-204ENST00000428026 NINLQ9Y2I6 1382 aa17.28■□□□□ 0.36
PTPRU-204ENST00000428026 RBM42Q9BTD8 480 aaKnown RBP17.27■□□□□ 0.36
PTPRU-204ENST00000428026 PPP2R1AP30153 589 aa17.27■□□□□ 0.36
PTPRU-204ENST00000428026 HSP90AB3PQ58FF7 597 aa17.27■□□□□ 0.36
PTPRU-204ENST00000428026 CT47A1Q5JQC4 288 aaPredicted RBP17.27■□□□□ 0.36
PTPRU-204ENST00000428026 DHX37Q8IY37 1157 aaKnown RBP17.27■□□□□ 0.36
PTPRU-204ENST00000428026 PLCD4Q9BRC7 762 aa17.27■□□□□ 0.36
PTPRU-204ENST00000428026 NOB1Q9ULX3 412 aaKnown RBP17.27■□□□□ 0.36
PTPRU-204ENST00000428026 TATP17735 454 aaPredicted RBP17.26■□□□□ 0.35
PTPRU-204ENST00000428026 PLEKHO1Q53GL0 409 aaPredicted RBP17.26■□□□□ 0.35
PTPRU-204ENST00000428026 THOC2Q8NI27 1593 aaKnown RBP17.26■□□□□ 0.35
PTPRU-204ENST00000428026 PTPN23Q9H3S7 1636 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 FYB1O15117 783 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 CCDC192P0DO97 292 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 VPS37DQ86XT2 251 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 MTMR7Q9Y216 660 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 PRKAR2BP31323 418 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 SKAP1Q86WV1 359 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 NOL10Q9BSC4 688 aaKnown RBP17.26■□□□□ 0.35
PTPRU-204ENST00000428026 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.26■□□□□ 0.359e-7■■■■■ 37.2
PTPRU-204ENST00000428026 STK3Q13188 491 aa17.26■□□□□ 0.35
PTPRU-204ENST00000428026 MCM2P49736 904 aa17.25■□□□□ 0.35
PTPRU-204ENST00000428026 DCTN1Q14203 1278 aa17.25■□□□□ 0.35
PTPRU-204ENST00000428026 PPP6R1Q9UPN7 881 aa17.25■□□□□ 0.35
PTPRU-204ENST00000428026 CCDC61Q9Y6R9 512 aa17.25■□□□□ 0.35
PTPRU-204ENST00000428026 PDE3AQ14432 1141 aa17.25■□□□□ 0.35
PTPRU-204ENST00000428026 RRS1Q15050 365 aaKnown RBP17.25■□□□□ 0.35
PTPRU-204ENST00000428026 TNMDQ9H2S6 317 aa17.25■□□□□ 0.35
PTPRU-204ENST00000428026 RIC3Q7Z5B4 369 aa17.24■□□□□ 0.35
PTPRU-204ENST00000428026 DHX29Q7Z478 1369 aaKnown RBP17.24■□□□□ 0.35
PTPRU-204ENST00000428026 DNAJC2Q99543 621 aaKnown RBP17.24■□□□□ 0.35
PTPRU-204ENST00000428026 SULT6B1Q6IMI4 303 aa17.24■□□□□ 0.35
PTPRU-204ENST00000428026 SERPINC1P01008 464 aa17.24■□□□□ 0.35
PTPRU-204ENST00000428026 NCOA1Q15788 1441 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 FOXO3O43524 673 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 CT47B1P0C2W7 299 aaPredicted RBP17.23■□□□□ 0.35
PTPRU-204ENST00000428026 STK38Q15208 465 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 CLASRPQ8N2M8 674 aaKnown RBP17.23■□□□□ 0.35
PTPRU-204ENST00000428026 TEX14Q8IWB6 1497 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 CCP110O43303 1012 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 PDCP20941 246 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 EPS15P42566 896 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 HSP90AB2PQ58FF8 381 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 STK11IPQ8N1F8 1099 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 CWC22Q9HCG8 908 aaKnown RBP17.23■□□□□ 0.35
PTPRU-204ENST00000428026 SMG6Q86US8 1419 aaKnown RBP17.23■□□□□ 0.35
PTPRU-204ENST00000428026 ADGRF5Q8IZF2 1346 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 TRIM34Q9BYJ4 488 aa17.23■□□□□ 0.35
PTPRU-204ENST00000428026 MAP4K4O95819 1239 aaPredicted RBP17.22■□□□□ 0.35
PTPRU-204ENST00000428026 GAS2L2Q8NHY3 880 aa17.22■□□□□ 0.35
PTPRU-204ENST00000428026 GCC1Q96CN9 775 aa17.22■□□□□ 0.35
PTPRU-204ENST00000428026 FAM177BA6PVY3 158 aa17.22■□□□□ 0.35
PTPRU-204ENST00000428026 PLCH2O75038 1416 aa17.22■□□□□ 0.35
PTPRU-204ENST00000428026 ZFYVE27Q5T4F4 411 aa17.21■□□□□ 0.35
PTPRU-204ENST00000428026 SF3B2Q13435 895 aaKnown RBP17.21■□□□□ 0.35
PTPRU-204ENST00000428026 GPATCH8Q9UKJ3 1502 aaKnown RBP17.21■□□□□ 0.35
PTPRU-204ENST00000428026 SAMD1Q6SPF0 538 aaPredicted RBP17.21■□□□□ 0.35
PTPRU-204ENST00000428026 SMARCE1Q969G3 411 aa17.21■□□□□ 0.35
PTPRU-204ENST00000428026 WDR7Q9Y4E6 1490 aa17.21■□□□□ 0.35
PTPRU-204ENST00000428026 EIF4G3O43432 1585 aaKnown RBP17.21■□□□□ 0.35
PTPRU-204ENST00000428026 ADAMTS2O95450 1211 aa17.21■□□□□ 0.35
PTPRU-204ENST00000428026 FILIP1LQ4L180 1135 aa17.21■□□□□ 0.35
PTPRU-204ENST00000428026 CTDP1Q9Y5B0 961 aaPredicted RBP17.21■□□□□ 0.35
PTPRU-204ENST00000428026 DMRT2Q9Y5R5 561 aa17.21■□□□□ 0.34
PTPRU-204ENST00000428026 CBX1P83916 185 aa17.2■□□□□ 0.34
PTPRU-204ENST00000428026 ZSCAN30Q86W11 494 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms