RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 PNNQ9H307 717 aaKnown RBP18.13■□□□□ 0.49
LIG1-202ENST00000427526 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.13■□□□□ 0.49
LIG1-202ENST00000427526 NOB1Q9ULX3 412 aaKnown RBP18.13■□□□□ 0.49
LIG1-202ENST00000427526 UPF2Q9HAU5 1272 aaKnown RBP18.13■□□□□ 0.49
LIG1-202ENST00000427526 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.13■□□□□ 0.49
LIG1-202ENST00000427526 KIF20BQ96Q89 1820 aa18.13■□□□□ 0.49
LIG1-202ENST00000427526 FCHSD2O94868 740 aa18.12■□□□□ 0.49
LIG1-202ENST00000427526 EMILIN1Q9Y6C2 1016 aa18.12■□□□□ 0.49
LIG1-202ENST00000427526 ANTXR1Q9H6X2 564 aa18.11■□□□□ 0.49
LIG1-202ENST00000427526 ITPRIPQ8IWB1 547 aa18.1■□□□□ 0.49
LIG1-202ENST00000427526 ZNF692Q9BU19 519 aaPredicted RBP18.1■□□□□ 0.49
LIG1-202ENST00000427526 ZBTB40Q9NUA8 1239 aa18.1■□□□□ 0.49
LIG1-202ENST00000427526 SMC5Q8IY18 1101 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 COG3Q96JB2 828 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 ACEP12821 1306 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 TMEM57Q8N5G2 664 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 LRRC7Q96NW7 1537 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 ALDH1L2Q3SY69 923 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 RSPH6AQ9H0K4 717 aa18.09■□□□□ 0.49
LIG1-202ENST00000427526 RRS1Q15050 365 aaKnown RBP18.08■□□□□ 0.49
LIG1-202ENST00000427526 KIF16BQ96L93 1317 aa18.08■□□□□ 0.49
LIG1-202ENST00000427526 PKNOX2Q96KN3 472 aa18.08■□□□□ 0.48
LIG1-202ENST00000427526 TBC1D2Q9BYX2 928 aa18.08■□□□□ 0.48
LIG1-202ENST00000427526 PLEKHG3A1L390 1219 aa18.07■□□□□ 0.48
LIG1-202ENST00000427526 IPO8O15397 1037 aaKnown RBP18.07■□□□□ 0.48
LIG1-202ENST00000427526 BRPF1P55201 1214 aaPredicted RBP18.07■□□□□ 0.48
LIG1-202ENST00000427526 KCNA6P17658 529 aa18.06■□□□□ 0.48
LIG1-202ENST00000427526 RIMS1Q86UR5 1692 aaKnown RBP18.05■□□□□ 0.48
LIG1-202ENST00000427526 TTC21BQ7Z4L5 1316 aa18.05■□□□□ 0.48
LIG1-202ENST00000427526 PRKAR2BP31323 418 aa18.05■□□□□ 0.48
LIG1-202ENST00000427526 SLKQ9H2G2 1235 aaPredicted RBP18.05■□□□□ 0.48
LIG1-202ENST00000427526 HMOX1P09601 288 aa18.05■□□□□ 0.48
LIG1-202ENST00000427526 ZNF428Q96B54 188 aa18.04■□□□□ 0.48
LIG1-202ENST00000427526 CEP170BQ9Y4F5 1589 aaPredicted RBP18.04■□□□□ 0.48
LIG1-202ENST00000427526 BRPF3Q9ULD4 1205 aa18.04■□□□□ 0.48
LIG1-202ENST00000427526 MON2Q7Z3U7 1717 aa18.03■□□□□ 0.48
LIG1-202ENST00000427526 IL13P35225 146 aa18.03■□□□□ 0.48
LIG1-202ENST00000427526 PHACTR3Q96KR7 559 aa18.03■□□□□ 0.48
LIG1-202ENST00000427526 PTCH1Q13635 1447 aa18.03■□□□□ 0.48
LIG1-202ENST00000427526 AATKQ6ZMQ8 1374 aa18.03■□□□□ 0.48
LIG1-202ENST00000427526 C22orf23Q9BZE7 217 aa18.02■□□□□ 0.48
LIG1-202ENST00000427526 MAP2P11137 1827 aaKnown RBP18.02■□□□□ 0.48
LIG1-202ENST00000427526 DNAJC5Q9H3Z4 198 aa18.02■□□□□ 0.48
LIG1-202ENST00000427526 NUCB1Q02818 461 aa18.01■□□□□ 0.47
LIG1-202ENST00000427526 NFE2L2Q16236 605 aa18.01■□□□□ 0.47
LIG1-202ENST00000427526 ANKLE2Q86XL3 938 aa18.01■□□□□ 0.47
LIG1-202ENST00000427526 AKAP12Q02952 1782 aa18.01■□□□□ 0.47
LIG1-202ENST00000427526 USP6P35125 1406 aa18■□□□□ 0.47
LIG1-202ENST00000427526 VAMP4O75379 141 aa18■□□□□ 0.47
LIG1-202ENST00000427526 RBM33Q96EV2 1170 aaKnown RBP18■□□□□ 0.47
LIG1-202ENST00000427526 ITSN1Q15811 1721 aa17.99■□□□□ 0.47
LIG1-202ENST00000427526 PLEKHG5O94827 1062 aa17.99■□□□□ 0.47
LIG1-202ENST00000427526 SOX12O15370 315 aa17.99■□□□□ 0.47
LIG1-202ENST00000427526 MFAP1P55081 439 aaKnown RBP17.98■□□□□ 0.47
LIG1-202ENST00000427526 DIP2AQ14689 1571 aa17.98■□□□□ 0.47
LIG1-202ENST00000427526 NGDNQ8NEJ9 315 aaKnown RBP17.98■□□□□ 0.47
LIG1-202ENST00000427526 ARHGAP45Q92619 1136 aa17.98■□□□□ 0.47
LIG1-202ENST00000427526 PIK3R4Q99570 1358 aa17.98■□□□□ 0.47
LIG1-202ENST00000427526 ZBTB7BO15156 539 aaPredicted RBP17.98■□□□□ 0.47
LIG1-202ENST00000427526 ZNF853P0CG23 659 aa17.98■□□□□ 0.47
LIG1-202ENST00000427526 MRPL50Q8N5N7 158 aaKnown RBP17.98■□□□□ 0.47
LIG1-202ENST00000427526 TOPAZ1Q8N9V7 1692 aa17.98■□□□□ 0.47
LIG1-202ENST00000427526 CDK12Q9NYV4 1490 aaPredicted RBP17.97■□□□□ 0.47
LIG1-202ENST00000427526 CALD1Q05682 793 aaKnown RBP17.97■□□□□ 0.47
LIG1-202ENST00000427526 RTN4Q9NQC3 1192 aaKnown RBP17.97■□□□□ 0.47
LIG1-202ENST00000427526 THUMPD2Q9BTF0 503 aaKnown RBP17.97■□□□□ 0.47
LIG1-202ENST00000427526 IFT57Q9NWB7 429 aa17.97■□□□□ 0.47
LIG1-202ENST00000427526 TSPYL6Q8N831 410 aa17.96■□□□□ 0.47
LIG1-202ENST00000427526 CHD1LQ86WJ1 897 aa17.96■□□□□ 0.47
LIG1-202ENST00000427526 GNAI1P63096 354 aa17.96■□□□□ 0.46
LIG1-202ENST00000427526 XRN1Q8IZH2 1706 aaKnown RBP17.95■□□□□ 0.46
LIG1-202ENST00000427526 SSH2Q76I76 1423 aa17.95■□□□□ 0.46
LIG1-202ENST00000427526 ADAMTSL3P82987 1691 aa17.95■□□□□ 0.46
LIG1-202ENST00000427526 OVOS2A0A0J9YW53 1432 aa17.94■□□□□ 0.46
LIG1-202ENST00000427526 OVOS2Q6IE36 1432 aa17.94■□□□□ 0.46
LIG1-202ENST00000427526 LNPKQ9C0E8 428 aa17.94■□□□□ 0.46
LIG1-202ENST00000427526 MBIPQ9NS73 344 aa17.94■□□□□ 0.46
LIG1-202ENST00000427526 RBM25P49756 843 aaKnown RBP17.93■□□□□ 0.46
LIG1-202ENST00000427526 NRKQ7Z2Y5 1582 aa17.93■□□□□ 0.46
LIG1-202ENST00000427526 EIF4A2Q14240 407 aaKnown RBP17.93■□□□□ 0.46
LIG1-202ENST00000427526 HSP90AB2PQ58FF8 381 aa17.93■□□□□ 0.46
LIG1-202ENST00000427526 CHMP4BQ9H444 224 aaKnown RBP17.93■□□□□ 0.46
LIG1-202ENST00000427526 ABCC4O15439 1325 aa17.92■□□□□ 0.46
LIG1-202ENST00000427526 GCC1Q96CN9 775 aa17.92■□□□□ 0.46
LIG1-202ENST00000427526 CFAP44Q96MT7 982 aa17.92■□□□□ 0.46
LIG1-202ENST00000427526 BMP2KLQ5H9B9 411 aa17.91■□□□□ 0.46
LIG1-202ENST00000427526 AEBP1Q8IUX7 1158 aa17.91■□□□□ 0.46
LIG1-202ENST00000427526 RGPD8O14715 1765 aaPredicted RBP17.91■□□□□ 0.46
LIG1-202ENST00000427526 SPRYD3Q8NCJ5 442 aa17.91■□□□□ 0.46
LIG1-202ENST00000427526 TTC21AQ8NDW8 1320 aa17.91■□□□□ 0.46
LIG1-202ENST00000427526 DLG5Q8TDM6 1919 aa17.9■□□□□ 0.46
LIG1-202ENST00000427526 NUTM2GQ5VZR2 741 aa17.9■□□□□ 0.46
LIG1-202ENST00000427526 SIRT2Q8IXJ6 389 aa17.9■□□□□ 0.46
LIG1-202ENST00000427526 CHMP5Q9NZZ3 219 aa17.9■□□□□ 0.46
LIG1-202ENST00000427526 USP31Q70CQ4 1352 aa17.9■□□□□ 0.46
LIG1-202ENST00000427526 TWISTNBQ3B726 338 aaPredicted RBP17.89■□□□□ 0.45
LIG1-202ENST00000427526 SULT6B1Q6IMI4 303 aa17.89■□□□□ 0.45
LIG1-202ENST00000427526 C8orf58Q8NAV2 365 aa17.89■□□□□ 0.45
LIG1-202ENST00000427526 ELL2O00472 640 aaPredicted RBP17.89■□□□□ 0.45
LIG1-202ENST00000427526 MCM4P33991 863 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms