RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 TMEM94Q12767 1356 aa34.5■■■■□ 3.11
LDB1-202ENST00000425280 RGPD1P0DJD0 1748 aa34.5■■■■□ 3.11
LDB1-202ENST00000425280 IL16Q14005 1332 aa34.49■■■■□ 3.11
LDB1-202ENST00000425280 GOLGA6L2Q8N9W4 650 aaPredicted RBP34.48■■■■□ 3.11
LDB1-202ENST00000425280 C1orf167Q5SNV9 1468 aa34.48■■■■□ 3.11
LDB1-202ENST00000425280 BCAR3O75815 825 aa34.46■■■■□ 3.11
LDB1-202ENST00000425280 C20orf194Q5TEA3 1177 aa34.46■■■■□ 3.11
LDB1-202ENST00000425280 NCOA3Q9Y6Q9 1424 aa34.46■■■■□ 3.11
LDB1-202ENST00000425280 CCDC136Q96JN2 1154 aa34.46■■■■□ 3.11
LDB1-202ENST00000425280 STRCQ7RTU9 1775 aa34.46■■■■□ 3.11
LDB1-202ENST00000425280 AMPHP49418 695 aa34.45■■■■□ 3.11
LDB1-202ENST00000425280 AEBP1Q8IUX7 1158 aa34.45■■■■□ 3.1
LDB1-202ENST00000425280 SULT6B1Q6IMI4 303 aa34.44■■■■□ 3.1
LDB1-202ENST00000425280 CRBNQ96SW2 442 aa34.44■■■■□ 3.1
LDB1-202ENST00000425280 FANCIQ9NVI1 1328 aa34.44■■■■□ 3.1
LDB1-202ENST00000425280 FOXO3O43524 673 aa34.43■■■■□ 3.1
LDB1-202ENST00000425280 KIF24Q5T7B8 1368 aa34.43■■■■□ 3.1
LDB1-202ENST00000425280 KIF1AQ12756 1690 aa34.42■■■■□ 3.1
LDB1-202ENST00000425280 TSR2Q969E8 191 aaKnown RBP34.42■■■■□ 3.1
LDB1-202ENST00000425280 DCCP43146 1447 aa34.41■■■■□ 3.1
LDB1-202ENST00000425280 ARHGEF10O15013 1369 aa34.4■■■■□ 3.1
LDB1-202ENST00000425280 DLG5Q8TDM6 1919 aa34.39■■■■□ 3.1
LDB1-202ENST00000425280 ATF3P18847 181 aa34.39■■■■□ 3.1
LDB1-202ENST00000425280 MST1RQ04912 1400 aa34.39■■■■□ 3.1
LDB1-202ENST00000425280 RARSP54136 660 aaKnown RBP34.39■■■■□ 3.1
LDB1-202ENST00000425280 HOXC9P31274 260 aa34.37■■■■□ 3.09
LDB1-202ENST00000425280 XPCQ01831 940 aaPredicted RBP34.37■■■■□ 3.09
LDB1-202ENST00000425280 NFAT5O94916 1531 aa34.37■■■■□ 3.09
LDB1-202ENST00000425280 TRPM3Q9HCF6 1732 aaPredicted RBP34.37■■■■□ 3.09
LDB1-202ENST00000425280 LTN1O94822 1766 aa34.34■■■■□ 3.09
LDB1-202ENST00000425280 CT47B1P0C2W7 299 aaPredicted RBP34.33■■■■□ 3.09
LDB1-202ENST00000425280 EXOSC9Q06265 439 aaKnown RBP34.33■■■■□ 3.09
LDB1-202ENST00000425280 RTL1A6NKG5 1358 aa34.33■■■■□ 3.09
LDB1-202ENST00000425280 LMOD3Q0VAK6 560 aa34.32■■■■□ 3.09
LDB1-202ENST00000425280 KRT28Q7Z3Y7 464 aa34.32■■■■□ 3.09
LDB1-202ENST00000425280 IGSF1Q8N6C5 1336 aa34.32■■■■□ 3.08
LDB1-202ENST00000425280 EYA1Q99502 592 aa34.31■■■■□ 3.08
LDB1-202ENST00000425280 THUMPD2Q9BTF0 503 aaKnown RBP34.31■■■■□ 3.08
LDB1-202ENST00000425280 CALD1Q05682 793 aaKnown RBP34.31■■■■□ 3.08
LDB1-202ENST00000425280 XIRP1Q702N8 1843 aaKnown RBP34.3■■■■□ 3.08
LDB1-202ENST00000425280 KDRP35968 1356 aa34.3■■■■□ 3.08
LDB1-202ENST00000425280 TSHZ2Q9NRE2 1034 aa34.3■■■■□ 3.08
LDB1-202ENST00000425280 KCNH5Q8NCM2 988 aa34.29■■■■□ 3.08
LDB1-202ENST00000425280 CADPS2Q86UW7 1296 aa34.29■■■■□ 3.08
LDB1-202ENST00000425280 MSH6P52701 1360 aa34.27■■■■□ 3.08
LDB1-202ENST00000425280 SLIT3O75094 1523 aa34.27■■■■□ 3.08
LDB1-202ENST00000425280 IP6K1Q92551 441 aa34.25■■■■□ 3.07
LDB1-202ENST00000425280 PDE3AQ14432 1141 aa34.24■■■■□ 3.07
LDB1-202ENST00000425280 IFT57Q9NWB7 429 aa34.24■■■■□ 3.07
LDB1-202ENST00000425280 FAM83GA6ND36 823 aa34.24■■■■□ 3.07
LDB1-202ENST00000425280 BCL2L13Q9BXK5 485 aa34.24■■■■□ 3.07
LDB1-202ENST00000425280 LAS1LQ9Y4W2 734 aaKnown RBP34.24■■■■□ 3.07
LDB1-202ENST00000425280 PHRF1Q9P1Y6 1649 aaKnown RBP34.23■■■■□ 3.07
LDB1-202ENST00000425280 ZNF853P0CG23 659 aa34.23■■■■□ 3.07
LDB1-202ENST00000425280 CANXP27824 592 aaKnown RBP34.23■■■■□ 3.07
LDB1-202ENST00000425280 USP19O94966 1318 aa34.23■■■■□ 3.07
LDB1-202ENST00000425280 GNAI1P63096 354 aa34.23■■■■□ 3.07
LDB1-202ENST00000425280 LMOD2Q6P5Q4 547 aa34.23■■■■□ 3.07
LDB1-202ENST00000425280 FRAT1Q92837 279 aaPredicted RBP34.22■■■■□ 3.07
LDB1-202ENST00000425280 ALS2Q96Q42 1657 aa34.21■■■■□ 3.07
LDB1-202ENST00000425280 GCP02774 474 aa34.21■■■■□ 3.07
LDB1-202ENST00000425280 LTV1Q96GA3 475 aaPredicted RBP34.21■■■■□ 3.07
LDB1-202ENST00000425280 DCTN1Q14203 1278 aa34.2■■■■□ 3.07
LDB1-202ENST00000425280 ZNF335Q9H4Z2 1342 aaPredicted RBP34.2■■■■□ 3.07
LDB1-202ENST00000425280 CFAP44Q96MT7 982 aa34.18■■■■□ 3.06
LDB1-202ENST00000425280 DDX17Q92841 729 aaKnown RBP34.17■■■■□ 3.06
LDB1-202ENST00000425280 MBIPQ9NS73 344 aa34.16■■■■□ 3.06
LDB1-202ENST00000425280 MTHFSDQ2M296 383 aaKnown RBP34.16■■■■□ 3.06
LDB1-202ENST00000425280 ARHGEF25Q86VW2 580 aa34.16■■■■□ 3.06
LDB1-202ENST00000425280 PANK1Q8TE04 598 aa34.16■■■■□ 3.06
LDB1-202ENST00000425280 ZBTB7CA1YPR0 619 aa34.15■■■■□ 3.06
LDB1-202ENST00000425280 SSH1Q8WYL5 1049 aa34.15■■■■□ 3.06
LDB1-202ENST00000425280 PLEKHG5O94827 1062 aa34.14■■■■□ 3.06
LDB1-202ENST00000425280 SMC4Q9NTJ3 1288 aa34.14■■■■□ 3.06
LDB1-202ENST00000425280 NPHP3Q7Z494 1330 aa34.13■■■■□ 3.05
LDB1-202ENST00000425280 MCM10Q7L590 875 aa34.11■■■■□ 3.05
LDB1-202ENST00000425280 TNNQ9UQP3 1299 aa34.11■■■■□ 3.05
LDB1-202ENST00000425280 MED1Q15648 1581 aaPredicted RBP34.11■■■■□ 3.05
LDB1-202ENST00000425280 GAS2L2Q8NHY3 880 aa34.1■■■■□ 3.05
LDB1-202ENST00000425280 COG6Q9Y2V7 657 aa34.09■■■■□ 3.05
LDB1-202ENST00000425280 PXDNQ92626 1479 aa34.08■■■■□ 3.05
LDB1-202ENST00000425280 RLBP1P12271 317 aa34.08■■■■□ 3.05
LDB1-202ENST00000425280 ALDH1L2Q3SY69 923 aa34.08■■■■□ 3.05
LDB1-202ENST00000425280 ZKSCAN2Q63HK3 967 aa34.08■■■■□ 3.05
LDB1-202ENST00000425280 ZNF428Q96B54 188 aa34.08■■■■□ 3.05
LDB1-202ENST00000425280 USHBP1Q8N6Y0 703 aa34.07■■■■□ 3.04
LDB1-202ENST00000425280 NBPF6Q5VWK0 638 aa34.07■■■■□ 3.04
LDB1-202ENST00000425280 NBPF4Q96M43 638 aa34.07■■■■□ 3.04
LDB1-202ENST00000425280 VAMP4O75379 141 aa34.06■■■■□ 3.04
LDB1-202ENST00000425280 CRB1P82279 1406 aa34.05■■■■□ 3.04
LDB1-202ENST00000425280 TSPYL6Q8N831 410 aa34.05■■■■□ 3.04
LDB1-202ENST00000425280 TNS3Q68CZ2 1445 aa34.05■■■■□ 3.04
LDB1-202ENST00000425280 RGPD2P0DJD1 1756 aa34.05■■■■□ 3.04
LDB1-202ENST00000425280 BRINP3Q76B58 766 aa34.05■■■■□ 3.04
LDB1-202ENST00000425280 CHL1O00533 1208 aa34.03■■■■□ 3.04
LDB1-202ENST00000425280 RTF1Q92541 710 aaKnown RBP34.03■■■■□ 3.04
LDB1-202ENST00000425280 CLUAP1Q96AJ1 413 aa34.02■■■■□ 3.04
LDB1-202ENST00000425280 C8orf58Q8NAV2 365 aa34.02■■■■□ 3.04
LDB1-202ENST00000425280 KDM2BQ8NHM5 1336 aa34.02■■■■□ 3.04
LDB1-202ENST00000425280 HTATSF1O43719 755 aaKnown RBP34■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms