RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	FAM205C	A6NFA0	338 aa		13.37	□□□□□ -0.27
NIF3L1-206	ENST00000416651	ITGAE	P38570	1179 aa		13.37	□□□□□ -0.27
NIF3L1-206	ENST00000416651	HAP1	P54257	671 aa	Predicted RBP	13.37	□□□□□ -0.27
NIF3L1-206	ENST00000416651	IFFO2	Q5TF58	517 aa		13.37	□□□□□ -0.27
NIF3L1-206	ENST00000416651	POTEB	Q6S5H4	581 aa		13.37	□□□□□ -0.27
NIF3L1-206	ENST00000416651	HS3ST6	Q96QI5	342 aa		13.37	□□□□□ -0.27
NIF3L1-206	ENST00000416651	LMOD2	Q6P5Q4	547 aa		13.36	□□□□□ -0.27
NIF3L1-206	ENST00000416651	BTG4	Q9NY30	223 aa		13.36	□□□□□ -0.27
NIF3L1-206	ENST00000416651	DISP2	A7MBM2	1401 aa		13.36	□□□□□ -0.27
NIF3L1-206	ENST00000416651	SENP3-EIF4A1	A0A087X0R7	540 aa		13.35	□□□□□ -0.27
NIF3L1-206	ENST00000416651	TMEM132E	Q6IEE7	984 aa		13.35	□□□□□ -0.27
NIF3L1-206	ENST00000416651	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.35	□□□□□ -0.27
NIF3L1-206	ENST00000416651	TNS3	Q68CZ2	1445 aa		13.35	□□□□□ -0.27
NIF3L1-206	ENST00000416651	FMN2	Q9NZ56	1722 aa		13.34	□□□□□ -0.27
NIF3L1-206	ENST00000416651	DPY19L2	Q6NUT2	758 aa		13.34	□□□□□ -0.27
NIF3L1-206	ENST00000416651	KRTAP3-3	Q9BYR6	98 aa		13.34	□□□□□ -0.27
NIF3L1-206	ENST00000416651	KRTAP3-2	Q9BYR7	98 aa		13.34	□□□□□ -0.27
NIF3L1-206	ENST00000416651	KIF1B	O60333	1816 aa		13.34	□□□□□ -0.27
NIF3L1-206	ENST00000416651	LRPPRC	P42704	1394 aa	Known RBP	13.33	□□□□□ -0.27
NIF3L1-206	ENST00000416651	NUP188	Q5SRE5	1749 aa		13.33	□□□□□ -0.27
NIF3L1-206	ENST00000416651	APBA3	O96018	575 aa		13.33	□□□□□ -0.28
NIF3L1-206	ENST00000416651	PDAP1	Q13442	181 aa	Known RBP	13.33	□□□□□ -0.28
NIF3L1-206	ENST00000416651	THSD7A	Q9UPZ6	1657 aa		13.33	□□□□□ -0.28
NIF3L1-206	ENST00000416651	ADGRF5	Q8IZF2	1346 aa		13.33	□□□□□ -0.28
NIF3L1-206	ENST00000416651	VGF	O15240	615 aa	Predicted RBP	13.32	□□□□□ -0.28
NIF3L1-206	ENST00000416651	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.32	□□□□□ -0.28
NIF3L1-206	ENST00000416651	SPATA31A5	Q5VU36	1347 aa		13.32	□□□□□ -0.28
NIF3L1-206	ENST00000416651	SPATA31A7	Q8IWB4	1347 aa		13.32	□□□□□ -0.28
NIF3L1-206	ENST00000416651	ROCK1	Q13464	1354 aa		13.32	□□□□□ -0.28
NIF3L1-206	ENST00000416651	CCDC144A	A2RUR9	1427 aa		13.31	□□□□□ -0.28
NIF3L1-206	ENST00000416651	RREB1	Q92766	1687 aa		13.31	□□□□□ -0.28
NIF3L1-206	ENST00000416651	PHF8	Q9UPP1	1060 aa		13.31	□□□□□ -0.28
NIF3L1-206	ENST00000416651	PPL	O60437	1756 aa		13.3	□□□□□ -0.28
NIF3L1-206	ENST00000416651	KIF1A	Q12756	1690 aa		13.29	□□□□□ -0.28
NIF3L1-206	ENST00000416651	PMFBP1	Q8TBY8	1022 aa		13.29	□□□□□ -0.28
NIF3L1-206	ENST00000416651	CABP2	Q9NPB3	220 aa		13.29	□□□□□ -0.28
NIF3L1-206	ENST00000416651	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.29	□□□□□ -0.28
NIF3L1-206	ENST00000416651		G3V3G9	751 aa		13.28	□□□□□ -0.28
NIF3L1-206	ENST00000416651	KCNQ2	O43526	872 aa		13.28	□□□□□ -0.28
NIF3L1-206	ENST00000416651	SPON1	Q9HCB6	807 aa		13.27	□□□□□ -0.29
NIF3L1-206	ENST00000416651	SBNO1	A3KN83	1393 aa		13.26	□□□□□ -0.29
NIF3L1-206	ENST00000416651	TECPR2	O15040	1411 aa		13.26	□□□□□ -0.29
NIF3L1-206	ENST00000416651	C1QTNF8	P60827	252 aa		13.26	□□□□□ -0.29
NIF3L1-206	ENST00000416651	BOLA1	Q9Y3E2	137 aa		13.26	□□□□□ -0.29
NIF3L1-206	ENST00000416651	COL14A1	Q05707	1796 aa	Known RBP	13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	IFT172	Q9UG01	1749 aa		13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	NRXN1	Q9ULB1	1477 aa		13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	PSME1	Q06323	249 aa		13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	CHRNA2	Q15822	529 aa		13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.25	□□□□□ -0.29
NIF3L1-206	ENST00000416651	NINL	Q9Y2I6	1382 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	SPATA31A1	Q5TZJ5	1347 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	HOXB3	P14651	431 aa	Predicted RBP	13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	FAM196A	Q6ZSG2	479 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	PTF1A	Q7RTS3	328 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	UTRN	P46939	3433 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	ADGRB2	O60241	1585 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	NRK	Q7Z2Y5	1582 aa		13.24	□□□□□ -0.29
NIF3L1-206	ENST00000416651	ABCC11	Q96J66	1382 aa		13.23	□□□□□ -0.29
NIF3L1-206	ENST00000416651	USP35	Q9P2H5	1018 aa		13.23	□□□□□ -0.29
NIF3L1-206	ENST00000416651	CRYBG1	Q9Y4K1	1723 aa		13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	ARHGEF10	O15013	1369 aa		13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	MYOM1	P52179	1685 aa		13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	RPGRIP1L	Q68CZ1	1315 aa		13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	RGL3	Q3MIN7	710 aa		13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	STRN4	Q9NRL3	753 aa		13.22	□□□□□ -0.29
NIF3L1-206	ENST00000416651	ALS2	Q96Q42	1657 aa		13.21	□□□□□ -0.29
NIF3L1-206	ENST00000416651	ZBTB7A	O95365	584 aa		13.21	□□□□□ -0.29
NIF3L1-206	ENST00000416651	NBPF8	Q3BBV2	869 aa		13.21	□□□□□ -0.29
NIF3L1-206	ENST00000416651	NBPF14	Q5TI25	921 aa		13.21	□□□□□ -0.29
NIF3L1-206	ENST00000416651	KNDC1	Q76NI1	1749 aa		13.21	□□□□□ -0.3
NIF3L1-206	ENST00000416651	CASZ1	Q86V15	1759 aa		13.2	□□□□□ -0.3
NIF3L1-206	ENST00000416651	PTGER2	P43116	358 aa		13.2	□□□□□ -0.3
NIF3L1-206	ENST00000416651	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.2	□□□□□ -0.3
NIF3L1-206	ENST00000416651	PARD3	Q8TEW0	1356 aa		13.2	□□□□□ -0.3
NIF3L1-206	ENST00000416651	ZNF710	Q8N1W2	664 aa		13.19	□□□□□ -0.3
NIF3L1-206	ENST00000416651	PRDM11	Q9NQV5	511 aa		13.19	□□□□□ -0.3
NIF3L1-206	ENST00000416651	RRBP1	Q9P2E9	1410 aa	Known RBP	13.19	□□□□□ -0.3
NIF3L1-206	ENST00000416651	PRR36	Q9H6K5	1346 aa		13.18	□□□□□ -0.3
NIF3L1-206	ENST00000416651	KIAA0232	Q92628	1395 aa		13.18	□□□□□ -0.3
NIF3L1-206	ENST00000416651	HOXB1	P14653	301 aa	Predicted RBP	13.17	□□□□□ -0.3
NIF3L1-206	ENST00000416651	NUTM2G	Q5VZR2	741 aa		13.17	□□□□□ -0.3
NIF3L1-206	ENST00000416651	ZC3H6	P61129	1189 aa	Known RBP	13.16	□□□□□ -0.3
NIF3L1-206	ENST00000416651	LARP1	Q6PKG0	1096 aa	Known RBP	13.16	□□□□□ -0.3
NIF3L1-206	ENST00000416651	PRAM1	Q96QH2	718 aa		13.16	□□□□□ -0.3
NIF3L1-206	ENST00000416651	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.16	□□□□□ -0.3
NIF3L1-206	ENST00000416651	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.16	□□□□□ -0.3
NIF3L1-206	ENST00000416651	PDE3B	Q13370	1112 aa		13.15	□□□□□ -0.3
NIF3L1-206	ENST00000416651	SYT17	Q9BSW7	474 aa		13.15	□□□□□ -0.3
NIF3L1-206	ENST00000416651	ACIN1	Q9UKV3	1341 aa	Known RBP	13.14	□□□□□ -0.31
NIF3L1-206	ENST00000416651	DOK7	Q18PE1	504 aa		13.14	□□□□□ -0.31
NIF3L1-206	ENST00000416651	CFAP70	Q5T0N1	1121 aa		13.14	□□□□□ -0.31
NIF3L1-206	ENST00000416651	CEP350	Q5VT06	3117 aa		13.14	□□□□□ -0.31
NIF3L1-206	ENST00000416651	ERBB3	P21860	1342 aa		13.13	□□□□□ -0.31
NIF3L1-206	ENST00000416651	PIK3C2G	O75747	1445 aa		13.13	□□□□□ -0.31
NIF3L1-206	ENST00000416651	SPATA31E1	Q6ZUB1	1445 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms