RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, human

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCT3-208	ENST00000415548	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
CCT3-208	ENST00000415548	ARHGEF25	Q86VW2	580 aa		11.7	□□□□□ -0.54
CCT3-208	ENST00000415548	USP35	Q9P2H5	1018 aa		11.7	□□□□□ -0.54
CCT3-208	ENST00000415548	COL5A2	P05997	1499 aa	Predicted RBP	11.7	□□□□□ -0.54
CCT3-208	ENST00000415548	KRT27	Q7Z3Y8	459 aa		11.69	□□□□□ -0.54
CCT3-208	ENST00000415548	AXIN2	Q9Y2T1	843 aa		11.69	□□□□□ -0.54
CCT3-208	ENST00000415548	OVOS2	A0A0J9YW53	1432 aa		11.69	□□□□□ -0.54
CCT3-208	ENST00000415548	OVOS2	Q6IE36	1432 aa		11.69	□□□□□ -0.54
CCT3-208	ENST00000415548	MYOM1	P52179	1685 aa		11.68	□□□□□ -0.54
CCT3-208	ENST00000415548	THSD7A	Q9UPZ6	1657 aa		11.68	□□□□□ -0.54
CCT3-208	ENST00000415548	RGPD5	Q99666	1765 aa		11.67	□□□□□ -0.54
CCT3-208	ENST00000415548	CNKSR2	Q8WXI2	1034 aa		11.67	□□□□□ -0.54
CCT3-208	ENST00000415548	POLR3GL	Q9BT43	218 aa		11.67	□□□□□ -0.54
CCT3-208	ENST00000415548	TCP11L2	Q8N4U5	519 aa		11.66	□□□□□ -0.54
CCT3-208	ENST00000415548	COG3	Q96JB2	828 aa		11.66	□□□□□ -0.54
CCT3-208	ENST00000415548	CRB1	P82279	1406 aa		11.66	□□□□□ -0.54
CCT3-208	ENST00000415548	LTN1	O94822	1766 aa		11.66	□□□□□ -0.54
CCT3-208	ENST00000415548	WDR17	Q8IZU2	1322 aa		11.65	□□□□□ -0.54
CCT3-208	ENST00000415548	BARGIN	Q6ZT62	677 aa		11.65	□□□□□ -0.54
CCT3-208	ENST00000415548	TOM1L2	Q6ZVM7	507 aa		11.65	□□□□□ -0.54
CCT3-208	ENST00000415548	GGNBP2	Q9H3C7	697 aa		11.65	□□□□□ -0.54
CCT3-208	ENST00000415548	ABCC6	O95255	1503 aa		11.65	□□□□□ -0.55
CCT3-208	ENST00000415548	FYB1	O15117	783 aa		11.64	□□□□□ -0.55
CCT3-208	ENST00000415548	CSB-PGBD3	P0DP91	1061 aa		11.64	□□□□□ -0.55
CCT3-208	ENST00000415548	HOXD11	P31277	338 aa	Predicted RBP	11.64	□□□□□ -0.55
CCT3-208	ENST00000415548	FAM182B	Q5T319	152 aa		11.64	□□□□□ -0.55
CCT3-208	ENST00000415548	CARD14	Q9BXL6	1004 aa		11.64	□□□□□ -0.55
CCT3-208	ENST00000415548	KIF20B	Q96Q89	1820 aa		11.63	□□□□□ -0.55
CCT3-208	ENST00000415548	NSD3	Q9BZ95	1437 aa		11.63	□□□□□ -0.55
CCT3-208	ENST00000415548	FBLN1	P23142	703 aa		11.63	□□□□□ -0.55
CCT3-208	ENST00000415548	CCDC125	Q86Z20	511 aa		11.63	□□□□□ -0.55
CCT3-208	ENST00000415548	THRAP3	Q9Y2W1	955 aa	Known RBP	11.63	□□□□□ -0.55
CCT3-208	ENST00000415548	BLM	P54132	1417 aa	Predicted RBP	11.62	□□□□□ -0.55
CCT3-208	ENST00000415548	C11orf95	C9JLR9	678 aa	Predicted RBP	11.62	□□□□□ -0.55
CCT3-208	ENST00000415548	PARP4	Q9UKK3	1724 aa	Known RBP	11.61	□□□□□ -0.55
CCT3-208	ENST00000415548	DCAF8L1	A6NGE4	600 aa		11.61	□□□□□ -0.55
CCT3-208	ENST00000415548	CARD10	Q9BWT7	1032 aa		11.61	□□□□□ -0.55
CCT3-208	ENST00000415548	ERBB3	P21860	1342 aa		11.6	□□□□□ -0.55
CCT3-208	ENST00000415548	MAP3K19	Q56UN5	1328 aa		11.6	□□□□□ -0.55
CCT3-208	ENST00000415548	PDE3B	Q13370	1112 aa		11.6	□□□□□ -0.55
CCT3-208	ENST00000415548	ANKRD24	Q8TF21	1146 aa		11.6	□□□□□ -0.55
CCT3-208	ENST00000415548	IP6K1	Q92551	441 aa		11.6	□□□□□ -0.55
CCT3-208	ENST00000415548	WNK3	Q9BYP7	1800 aa		11.6	□□□□□ -0.55
CCT3-208	ENST00000415548	AMPH	P49418	695 aa		11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	SF3B2	Q13435	895 aa	Known RBP	11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	RRS1	Q15050	365 aa	Known RBP	11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	DEFB132	Q7Z7B7	95 aa		11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	LTV1	Q96GA3	475 aa	Predicted RBP	11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	NLRP2	Q9NX02	1062 aa		11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	LRRC37A3	O60309	1634 aa		11.59	□□□□□ -0.55
CCT3-208	ENST00000415548	CCDC7	Q96M83	1385 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	HOXC9	P31274	260 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	DDB1	Q16531	1140 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	FAM196A	Q6ZSG2	479 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	PANK3	Q9H999	370 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	DISP2	A7MBM2	1401 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	CGNL1	Q0VF96	1302 aa		11.58	□□□□□ -0.56
CCT3-208	ENST00000415548	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.57	□□□□□ -0.56
CCT3-208	ENST00000415548	RNF216	Q9NWF9	866 aa	Predicted RBP	11.57	□□□□□ -0.56
CCT3-208	ENST00000415548	RGPD1	P0DJD0	1748 aa		11.57	□□□□□ -0.56
CCT3-208	ENST00000415548	KIF7	Q2M1P5	1343 aa		11.57	□□□□□ -0.56
CCT3-208	ENST00000415548	RTL1	A6NKG5	1358 aa		11.56	□□□□□ -0.56
CCT3-208	ENST00000415548	TRIM37	O94972	964 aa		11.56	□□□□□ -0.56
CCT3-208	ENST00000415548	PEAK1	Q9H792	1746 aa		11.55	□□□□□ -0.56
CCT3-208	ENST00000415548	TNS1	Q9HBL0	1735 aa	Known RBP	11.55	□□□□□ -0.56
CCT3-208	ENST00000415548	RGPD2	P0DJD1	1756 aa		11.54	□□□□□ -0.56
CCT3-208	ENST00000415548	OVOS2	A0A0G2JMS6	1433 aa		11.54	□□□□□ -0.56
CCT3-208	ENST00000415548	BAG6	P46379	1132 aa		11.54	□□□□□ -0.56
CCT3-208	ENST00000415548	MARCH10	Q8NA82	808 aa	Predicted RBP	11.54	□□□□□ -0.56
CCT3-208	ENST00000415548	EMILIN1	Q9Y6C2	1016 aa		11.54	□□□□□ -0.56
CCT3-208	ENST00000415548	FAM208A	Q9UK61	1670 aa	Known RBP	11.54	□□□□□ -0.56
CCT3-208	ENST00000415548	ANKRD26	Q9UPS8	1709 aa		11.53	□□□□□ -0.56
CCT3-208	ENST00000415548	EXOC5	O00471	708 aa		11.53	□□□□□ -0.56
CCT3-208	ENST00000415548	IL2RB	P14784	551 aa		11.53	□□□□□ -0.56
CCT3-208	ENST00000415548	EN1	Q05925	392 aa	Predicted RBP	11.53	□□□□□ -0.56
CCT3-208	ENST00000415548	HSP90AB2P	Q58FF8	381 aa		11.53	□□□□□ -0.56
CCT3-208	ENST00000415548	FLT4	P35916	1363 aa		11.53	□□□□□ -0.56
CCT3-208	ENST00000415548	TNS2	Q63HR2	1409 aa		11.52	□□□□□ -0.56
CCT3-208	ENST00000415548	PPM1G	O15355	546 aa	Predicted RBP	11.52	□□□□□ -0.57
CCT3-208	ENST00000415548	TNNT2	P45379	298 aa	Predicted RBP	11.52	□□□□□ -0.57
CCT3-208	ENST00000415548	INSR	P06213	1382 aa		11.52	□□□□□ -0.57
CCT3-208	ENST00000415548	KIF24	Q5T7B8	1368 aa		11.52	□□□□□ -0.57
CCT3-208	ENST00000415548	MAP2	P11137	1827 aa	Known RBP	11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	SBF2	Q86WG5	1849 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	APBA3	O96018	575 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	NBPF6	Q5VWK0	638 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	USHBP1	Q8N6Y0	703 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	NBPF4	Q96M43	638 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	WASHC2A	Q641Q2	1341 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	NSD2	O96028	1365 aa		11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	SMG6	Q86US8	1419 aa	Known RBP	11.51	□□□□□ -0.57
CCT3-208	ENST00000415548	EZH2	Q15910	746 aa	Known RBP	11.5	□□□□□ -0.57
CCT3-208	ENST00000415548	POLK	Q9UBT6	870 aa		11.5	□□□□□ -0.57
CCT3-208	ENST00000415548	KNSTRN	Q9Y448	316 aa		11.5	□□□□□ -0.57
CCT3-208	ENST00000415548	PTF1A	Q7RTS3	328 aa		11.49	□□□□□ -0.57
CCT3-208	ENST00000415548	MORC1	Q86VD1	984 aa		11.49	□□□□□ -0.57
CCT3-208	ENST00000415548	CAMKK2	Q96RR4	588 aa		11.49	□□□□□ -0.57
CCT3-208	ENST00000415548	BCL9	O00512	1426 aa		11.49	□□□□□ -0.57
CCT3-208	ENST00000415548	MEGF6	O75095	1541 aa		11.49	□□□□□ -0.57
CCT3-208	ENST00000415548	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms