RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 TRIM67Q6ZTA4 783 aa7.62□□□□□ -1.19
BRCA1-204ENST00000412061 RNF135Q8IUD6 432 aa7.62□□□□□ -1.19
BRCA1-204ENST00000412061 FOXJ1Q92949 421 aa7.62□□□□□ -1.19
BRCA1-204ENST00000412061 EMID1Q96A84 441 aaPredicted RBP7.62□□□□□ -1.19
BRCA1-204ENST00000412061 USP17L3A6NCW0 530 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 USP17L4A6NCW7 530 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 USP17L5A8MUK1 530 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 RNF223E7ERA6 249 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 USP17L2Q6R6M4 530 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 USP17L1Q7RTZ2 530 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 PLEKHM2Q8IWE5 1019 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 ANKLE1Q8NAG6 615 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 FAM174AQ8TBP5 190 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 VRTNQ9H8Y1 702 aa7.61□□□□□ -1.19
BRCA1-204ENST00000412061 ATG7O95352 703 aa7.6□□□□□ -1.19
BRCA1-204ENST00000412061 ERFEQ4G0M1 354 aa7.6□□□□□ -1.19
BRCA1-204ENST00000412061 CDCA8Q53HL2 280 aa7.6□□□□□ -1.19
BRCA1-204ENST00000412061 PHTF2Q8N3S3 785 aa7.6□□□□□ -1.19
BRCA1-204ENST00000412061 SLC10A4Q96EP9 437 aa7.6□□□□□ -1.19
BRCA1-204ENST00000412061 USTQ9Y2C2 406 aa7.6□□□□□ -1.19
BRCA1-204ENST00000412061 LZTS3O60299 673 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-204ENST00000412061 SH3BP2P78314 561 aa7.59□□□□□ -1.19
BRCA1-204ENST00000412061 KCTD17Q8N5Z5 321 aa7.59□□□□□ -1.19
BRCA1-204ENST00000412061 PLPP7Q8NBV4 271 aa7.59□□□□□ -1.19
BRCA1-204ENST00000412061 ZNF775Q96BV0 537 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-204ENST00000412061 TRIM32Q13049 653 aa7.58□□□□□ -1.2
BRCA1-204ENST00000412061 MAP7D1Q3KQU3 841 aa7.58□□□□□ -1.2
BRCA1-204ENST00000412061 C4orf48Q5BLP8 95 aa7.58□□□□□ -1.2
BRCA1-204ENST00000412061 KANK4Q5T7N3 995 aaPredicted RBP7.58□□□□□ -1.2
BRCA1-204ENST00000412061 C1QTNF2Q9BXJ5 285 aa7.58□□□□□ -1.2
BRCA1-204ENST00000412061 CHIC2Q9UKJ5 165 aa7.58□□□□□ -1.2
BRCA1-204ENST00000412061 CDV3Q9UKY7 258 aaKnown RBP7.58□□□□□ -1.2
BRCA1-204ENST00000412061 NBPF20Q3BBV1 942 aa7.57□□□□□ -1.2
BRCA1-204ENST00000412061 RNF20Q5VTR2 975 aa7.57□□□□□ -1.2
BRCA1-204ENST00000412061 DEPDC4Q8N2C3 294 aa7.57□□□□□ -1.2
BRCA1-204ENST00000412061 RPIAP49247 311 aa7.56□□□□□ -1.2
BRCA1-204ENST00000412061 WNT7BP56706 349 aa7.56□□□□□ -1.2
BRCA1-204ENST00000412061 NCOA4Q13772 614 aa7.56□□□□□ -1.2
BRCA1-204ENST00000412061 EML3Q32P44 896 aa7.56□□□□□ -1.2
BRCA1-204ENST00000412061 PLA2G2CQ5R387 149 aa7.56□□□□□ -1.2
BRCA1-204ENST00000412061 TRMT44Q8IYL2 757 aaKnown RBP7.56□□□□□ -1.2
BRCA1-204ENST00000412061 MKRN1Q9UHC7 482 aaKnown RBP7.56□□□□□ -1.2
BRCA1-204ENST00000412061 ATP5J2-PTCD1G3V325 749 aa7.55□□□□□ -1.2
BRCA1-204ENST00000412061 GIGYF1O75420 1035 aaPredicted RBP7.55□□□□□ -1.2
BRCA1-204ENST00000412061 VARSP26640 1264 aaKnown RBP7.55□□□□□ -1.2
BRCA1-204ENST00000412061 SLC19A1P41440 591 aa7.55□□□□□ -1.2
BRCA1-204ENST00000412061 ELOAQ14241 798 aaKnown RBP7.55□□□□□ -1.2
BRCA1-204ENST00000412061 DOLKQ9UPQ8 538 aa7.55□□□□□ -1.2
BRCA1-204ENST00000412061 FAM196BA6NMK8 535 aa7.54□□□□□ -1.2
BRCA1-204ENST00000412061 CCDC125Q86Z20 511 aa7.54□□□□□ -1.2
BRCA1-204ENST00000412061 POTECB2RU33 542 aa7.53□□□□□ -1.2
BRCA1-204ENST00000412061 MYT1Q01538 1121 aa7.53□□□□□ -1.2
BRCA1-204ENST00000412061 SPRYD7Q5W111 196 aa7.53□□□□□ -1.2
BRCA1-204ENST00000412061 LARP1Q6PKG0 1096 aaKnown RBP7.53□□□□□ -1.2
BRCA1-204ENST00000412061 AEBP1Q8IUX7 1158 aa7.53□□□□□ -1.2
BRCA1-204ENST00000412061 SEPT12Q8IYM1 358 aa7.53□□□□□ -1.2
BRCA1-204ENST00000412061 CCDC85AQ96PX6 553 aaPredicted RBP7.53□□□□□ -1.2
BRCA1-204ENST00000412061 NOD1Q9Y239 953 aa7.53□□□□□ -1.2
BRCA1-204ENST00000412061 ESPNB1AK53 854 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L15C9J2P7 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L10C9JJH3 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L13C9JLJ4 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L12C9JPN9 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L11C9JVI0 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L21D6R901 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L18D6R9N7 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L22D6RA61 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L17D6RBQ6 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L19D6RCP7 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L20D6RJB6 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 CD2BP2O95400 341 aaKnown RBP7.52□□□□□ -1.2
BRCA1-204ENST00000412061 RASA1P20936 1047 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 SKOR1P84550 965 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 USP17L24Q0WX57 530 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 TSGA10IPQ3SY00 556 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 OXLD1Q5BKU9 147 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 TRIM50Q86XT4 487 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 NOVA2Q9UNW9 492 aaKnown RBP7.52□□□□□ -1.2
BRCA1-204ENST00000412061 MAP4K5Q9Y4K4 846 aa7.52□□□□□ -1.2
BRCA1-204ENST00000412061 TMEM88BA6NKF7 163 aa7.52□□□□□ -1.21
BRCA1-204ENST00000412061 ATP1A2P50993 1020 aa7.52□□□□□ -1.21
BRCA1-204ENST00000412061 LIAT1Q6ZQX7 453 aa7.52□□□□□ -1.21
BRCA1-204ENST00000412061 EHBP1Q8NDI1 1231 aa7.52□□□□□ -1.21
BRCA1-204ENST00000412061 KCTD15Q96SI1 283 aaPredicted RBP7.52□□□□□ -1.21
BRCA1-204ENST00000412061 ZMIZ1Q9ULJ6 1067 aa7.52□□□□□ -1.21
BRCA1-204ENST00000412061 PATL2C9JE40 543 aaKnown RBP7.51□□□□□ -1.21
BRCA1-204ENST00000412061 BRD1O95696 1058 aa7.51□□□□□ -1.21
BRCA1-204ENST00000412061 PTK7Q13308 1070 aa7.51□□□□□ -1.21
BRCA1-204ENST00000412061 PKDCCQ504Y2 493 aa7.51□□□□□ -1.21
BRCA1-204ENST00000412061 CRTC2Q53ET0 693 aaPredicted RBP7.51□□□□□ -1.21
BRCA1-204ENST00000412061 VASH1Q7L8A9 365 aaPredicted RBP7.51□□□□□ -1.21
BRCA1-204ENST00000412061 ZNF598Q86UK7 904 aaKnown RBP7.51□□□□□ -1.21
BRCA1-204ENST00000412061 OGFOD1Q8N543 542 aa7.51□□□□□ -1.21
BRCA1-204ENST00000412061 SIRT1Q96EB6 747 aa7.51□□□□□ -1.21
BRCA1-204ENST00000412061 PCDHB11Q9Y5F2 797 aa7.51□□□□□ -1.21
BRCA1-204ENST00000412061 CARNS1A5YM72 827 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 PRR20EP86478 221 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 PRR20CP86479 221 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 PRR20DP86480 221 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 PRR20BP86481 221 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms