RNA–Protein interactions for RNA: ENST00000410828.1

RNU4-53P-201, Transcript of RNA, U4 small nuclear 53, pseudogene, humanhuman

BASIC

Gene RNU4-53P, Length 140 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-53P-201ENST00000410828 NRKQ7Z2Y5 1582 aa3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 HSPA6P17066 643 aa3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 KCNH5Q8NCM2 988 aa3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 CARD10Q9BWT7 1032 aa3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 GPBP1L1Q9HC44 474 aaPredicted RBP3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 BRD4O60885 1362 aaPredicted RBP3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 ABCA3Q99758 1704 aa3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 COL5A2P05997 1499 aaPredicted RBP3.47□□□□□ -1.85
RNU4-53P-201ENST00000410828 ALS2Q96Q42 1657 aa3.46□□□□□ -1.85
RNU4-53P-201ENST00000410828 SRPK2P78362 688 aaKnown RBP3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 TFCP2L1Q9NZI6 479 aa3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 CABP1Q9NZU7 370 aa3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 AXIN2Q9Y2T1 843 aa3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 NUP188Q5SRE5 1749 aa3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 TRPM3Q9HCF6 1732 aaPredicted RBP3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 ADGRB1O14514 1584 aa3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 RREB1Q92766 1687 aa3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 RGPD8O14715 1765 aaPredicted RBP3.46□□□□□ -1.86
RNU4-53P-201ENST00000410828 IFT172Q9UG01 1749 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 ZNF827Q17R98 1081 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 SLC27A3Q5K4L6 730 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 ARHGEF25Q86VW2 580 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 NLGN2Q8NFZ4 835 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 AKT1S1Q96B36 256 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 ACSBG1Q96GR2 724 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 ZNF692Q9BU19 519 aaPredicted RBP3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 LRRC4BQ9NT99 713 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 CCDC7Q96M83 1385 aa3.45□□□□□ -1.86
RNU4-53P-201ENST00000410828 USP6P35125 1406 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 ATP10DQ9P241 1426 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 SOX12O15370 315 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 MSH5O43196 834 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 IL2RBP14784 551 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 YBX3P16989 372 aaKnown RBP eCLIP3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 HMGB2P26583 209 aaKnown RBP3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 ZNF526Q8TF50 670 aaPredicted RBP3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 CABP2Q9NPB3 220 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 NLRP2Q9NX02 1062 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 PPIP5K1Q6PFW1 1433 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 PNPLA7Q6ZV29 1317 aa3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 CENPJQ9HC77 1338 aaPredicted RBP3.44□□□□□ -1.86
RNU4-53P-201ENST00000410828 CASZ1Q86V15 1759 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 MYOM1P52179 1685 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 CHD4Q14839 1912 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 APLP1P51693 650 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 DDX54Q8TDD1 881 aaKnown RBP3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 SYTL4Q96C24 671 aaPredicted RBP3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 CD2APQ9Y5K6 639 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 PARP4Q9UKK3 1724 aaKnown RBP3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 CPSF1Q10570 1443 aaKnown RBP3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 TNS2Q63HR2 1409 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 RGPD3A6NKT7 1758 aaPredicted RBP3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 RGPD4Q7Z3J3 1758 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 ERBB3P21860 1342 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 TTC21BQ7Z4L5 1316 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 TTC21AQ8NDW8 1320 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 LMO7Q8WWI1 1683 aa3.43□□□□□ -1.86
RNU4-53P-201ENST00000410828 PEAK1Q9H792 1746 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 CRYBG1Q9Y4K1 1723 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 PHRF1Q9P1Y6 1649 aaKnown RBP3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 KIF3CO14782 793 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 TOMM70O94826 608 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 KCNQ4P56696 695 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 NBPF1Q3BBV0 1214 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 COL23A1Q86Y22 540 aaPredicted RBP3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 FLAD1Q8NFF5 587 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 CCNL1Q9UK58 526 aaPredicted RBP3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 EVC2Q86UK5 1308 aa3.42□□□□□ -1.86
RNU4-53P-201ENST00000410828 GOLGB1Q14789 3259 aaKnown RBP3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 LRRC37A3O60309 1634 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 ADCY9O60503 1353 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 SLIT3O75094 1523 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 KAT6BQ8WYB5 2073 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 PRIM1P49642 420 aaKnown RBP3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 COL13A1Q5TAT6 717 aaPredicted RBP3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 MSL1Q68DK7 614 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 TNS4Q8IZW8 715 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 DNAJC5GQ8N7S2 189 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 ANKRD24Q8TF21 1146 aa3.41□□□□□ -1.86
RNU4-53P-201ENST00000410828 RAB3GAP2Q9H2M9 1393 aa3.4□□□□□ -1.86
RNU4-53P-201ENST00000410828 CAPN15O75808 1086 aa3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 PRELPP51888 382 aa3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 ZCRB1Q8TBF4 217 aaKnown RBP3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 SHANK3Q9BYB0 1731 aa3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 WWC3Q9ULE0 1092 aa3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 IGSF1Q8N6C5 1336 aa3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 SBF2Q86WG5 1849 aa3.4□□□□□ -1.87
RNU4-53P-201ENST00000410828 USP31Q70CQ4 1352 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 KTN1Q86UP2 1357 aaKnown RBP3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 ANKRD36BQ8N2N9 1353 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 USP47Q96K76 1375 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 ITSN1Q15811 1721 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 FSTL1Q12841 308 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 NME9Q86XW9 330 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 C16orf71Q8IYS4 520 aaPredicted RBP3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 JMYQ8N9B5 988 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 RBM46Q8TBY0 533 aaKnown RBP3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 IP6K1Q92551 441 aa3.39□□□□□ -1.87
RNU4-53P-201ENST00000410828 KLRG1Q96E93 195 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms