RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 COL5A2P05997 1499 aaPredicted RBP27.27■■□□□ 1.96
PDLIM2-207ENST00000409417 KIF20BQ96Q89 1820 aa27.26■■□□□ 1.95
PDLIM2-207ENST00000409417 COL18A1P39060 1754 aa27.26■■□□□ 1.95
PDLIM2-207ENST00000409417 GLI3P10071 1580 aa27.26■■□□□ 1.95
PDLIM2-207ENST00000409417 ABCC6O95255 1503 aa27.25■■□□□ 1.95
PDLIM2-207ENST00000409417 RGS12O14924 1447 aa27.25■■□□□ 1.95
PDLIM2-207ENST00000409417 LARP1Q6PKG0 1096 aaKnown RBP27.25■■□□□ 1.95
PDLIM2-207ENST00000409417 ONECUT3O60422 494 aaPredicted RBP27.24■■□□□ 1.95
PDLIM2-207ENST00000409417 FBLN1P23142 703 aa27.24■■□□□ 1.95
PDLIM2-207ENST00000409417 MAP3K19Q56UN5 1328 aa27.23■■□□□ 1.95
PDLIM2-207ENST00000409417 SPATA31A1Q5TZJ5 1347 aa27.23■■□□□ 1.95
PDLIM2-207ENST00000409417 NSD2O96028 1365 aa27.22■■□□□ 1.95
PDLIM2-207ENST00000409417 PER1O15534 1290 aaPredicted RBP27.21■■□□□ 1.95
PDLIM2-207ENST00000409417 IP6K1Q92551 441 aa27.21■■□□□ 1.95
PDLIM2-207ENST00000409417 SOCS7O14512 581 aa27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 RRS1Q15050 365 aaKnown RBP27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 WDR17Q8IZU2 1322 aa27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 AMPHP49418 695 aa27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 CRB1P82279 1406 aa27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 FAM98CQ17RN3 349 aaKnown RBP27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 AMER1Q5JTC6 1135 aaPredicted RBP27.19■■□□□ 1.94
PDLIM2-207ENST00000409417 LTN1O94822 1766 aa27.18■■□□□ 1.94
PDLIM2-207ENST00000409417 SEPT12Q8IYM1 358 aa27.18■■□□□ 1.94
PDLIM2-207ENST00000409417 USP35Q9P2H5 1018 aa27.18■■□□□ 1.94
PDLIM2-207ENST00000409417 BLMP54132 1417 aaPredicted RBP27.17■■□□□ 1.94
PDLIM2-207ENST00000409417 CSB-PGBD3P0DP91 1061 aa27.17■■□□□ 1.94
PDLIM2-207ENST00000409417 TCP11L2Q8N4U5 519 aa27.17■■□□□ 1.94
PDLIM2-207ENST00000409417 HOXC9P31274 260 aa27.16■■□□□ 1.94
PDLIM2-207ENST00000409417 TOM1L2Q6ZVM7 507 aa27.16■■□□□ 1.94
PDLIM2-207ENST00000409417 ERBB3P21860 1342 aa27.16■■□□□ 1.94
PDLIM2-207ENST00000409417 RTL1A6NKG5 1358 aa27.16■■□□□ 1.94
PDLIM2-207ENST00000409417 BARGINQ6ZT62 677 aa27.15■■□□□ 1.94
PDLIM2-207ENST00000409417 THRAP3Q9Y2W1 955 aaKnown RBP27.15■■□□□ 1.94
PDLIM2-207ENST00000409417 KIF24Q5T7B8 1368 aa27.14■■□□□ 1.94
PDLIM2-207ENST00000409417 RGPD5Q99666 1765 aa27.13■■□□□ 1.93
PDLIM2-207ENST00000409417 MORC1Q86VD1 984 aa27.13■■□□□ 1.93
PDLIM2-207ENST00000409417 ANKRD24Q8TF21 1146 aa27.13■■□□□ 1.93
PDLIM2-207ENST00000409417 CARD10Q9BWT7 1032 aa27.13■■□□□ 1.93
PDLIM2-207ENST00000409417 A0A0G2JS52 829 aa27.12■■□□□ 1.93
PDLIM2-207ENST00000409417 MYT1Q01538 1121 aa27.12■■□□□ 1.93
PDLIM2-207ENST00000409417 ANKRD26Q9UPS8 1709 aa27.11■■□□□ 1.93
PDLIM2-207ENST00000409417 TNNT2P45379 298 aaPredicted RBP27.11■■□□□ 1.93
PDLIM2-207ENST00000409417 EMILIN1Q9Y6C2 1016 aa27.11■■□□□ 1.93
PDLIM2-207ENST00000409417 FLT4P35916 1363 aa27.1■■□□□ 1.93
PDLIM2-207ENST00000409417 NLRP2Q9NX02 1062 aa27.09■■□□□ 1.93
PDLIM2-207ENST00000409417 POLKQ9UBT6 870 aa27.09■■□□□ 1.93
PDLIM2-207ENST00000409417 NPC1L1Q9UHC9 1359 aa27.08■■□□□ 1.93
PDLIM2-207ENST00000409417 LTV1Q96GA3 475 aaPredicted RBP27.07■■□□□ 1.92
PDLIM2-207ENST00000409417 PPM1GO15355 546 aaPredicted RBP27.06■■□□□ 1.92
PDLIM2-207ENST00000409417 HSP90AB2PQ58FF8 381 aa27.06■■□□□ 1.92
PDLIM2-207ENST00000409417 INSRP06213 1382 aa27.06■■□□□ 1.92
PDLIM2-207ENST00000409417 THSD7AQ9UPZ6 1657 aa27.06■■□□□ 1.92
PDLIM2-207ENST00000409417 CC2D1BQ5T0F9 858 aaKnown RBP27.06■■□□□ 1.92
PDLIM2-207ENST00000409417 KRT27Q7Z3Y8 459 aa27.05■■□□□ 1.92
PDLIM2-207ENST00000409417 PEAK1Q9H792 1746 aa27.04■■□□□ 1.92
PDLIM2-207ENST00000409417 CDCA7Q9BWT1 371 aaPredicted RBP27.03■■□□□ 1.92
PDLIM2-207ENST00000409417 MAP2P11137 1827 aaKnown RBP27.01■■□□□ 1.91
PDLIM2-207ENST00000409417 SMG6Q86US8 1419 aaKnown RBP27.01■■□□□ 1.91
PDLIM2-207ENST00000409417 EP400Q96L91 3159 aa27■■□□□ 1.91
PDLIM2-207ENST00000409417 BRWD3Q6RI45 1802 aa26.99■■□□□ 1.91
PDLIM2-207ENST00000409417 DISP2A7MBM2 1401 aa26.98■■□□□ 1.91
PDLIM2-207ENST00000409417 FAM208AQ9UK61 1670 aaKnown RBP26.97■■□□□ 1.91
PDLIM2-207ENST00000409417 PDE3BQ13370 1112 aa26.97■■□□□ 1.91
PDLIM2-207ENST00000409417 NBPF6Q5VWK0 638 aa26.97■■□□□ 1.91
PDLIM2-207ENST00000409417 NBPF4Q96M43 638 aa26.97■■□□□ 1.91
PDLIM2-207ENST00000409417 UPF1Q92900 1129 aaKnown RBP eCLIP26.96■■□□□ 1.914e-7■■■■■ 26.8
PDLIM2-207ENST00000409417 IL2RBP14784 551 aa26.95■■□□□ 1.91
PDLIM2-207ENST00000409417 CNGB1Q14028 1251 aaPredicted RBP26.95■■□□□ 1.91
PDLIM2-207ENST00000409417 DDB1Q16531 1140 aa26.95■■□□□ 1.91
PDLIM2-207ENST00000409417 DDX10Q13206 875 aaKnown RBP26.94■■□□□ 1.9
PDLIM2-207ENST00000409417 PARP4Q9UKK3 1724 aaKnown RBP26.94■■□□□ 1.9
PDLIM2-207ENST00000409417 EXOC5O00471 708 aa26.91■■□□□ 1.9
PDLIM2-207ENST00000409417 MTHFSP49914 203 aa26.91■■□□□ 1.9
PDLIM2-207ENST00000409417 EIF4A2Q14240 407 aaKnown RBP26.91■■□□□ 1.9
PDLIM2-207ENST00000409417 FAM182BQ5T319 152 aa26.9■■□□□ 1.9
PDLIM2-207ENST00000409417 FAM196AQ6ZSG2 479 aa26.89■■□□□ 1.9
PDLIM2-207ENST00000409417 USHBP1Q8N6Y0 703 aa26.89■■□□□ 1.9
PDLIM2-207ENST00000409417 WNK3Q9BYP7 1800 aa26.89■■□□□ 1.9
PDLIM2-207ENST00000409417 LRRC37A3O60309 1634 aa26.88■■□□□ 1.89
PDLIM2-207ENST00000409417 CCDC125Q86Z20 511 aa26.87■■□□□ 1.89
PDLIM2-207ENST00000409417 EYA1Q99502 592 aa26.87■■□□□ 1.89
PDLIM2-207ENST00000409417 RGPD2P0DJD1 1756 aa26.87■■□□□ 1.89
PDLIM2-207ENST00000409417 TNS2Q63HR2 1409 aa26.86■■□□□ 1.89
PDLIM2-207ENST00000409417 ZNF316A6NFI3 1004 aaPredicted RBP26.86■■□□□ 1.89
PDLIM2-207ENST00000409417 RAPGEF4Q8WZA2 1011 aa26.85■■□□□ 1.89
PDLIM2-207ENST00000409417 NCAPD2Q15021 1401 aa26.85■■□□□ 1.89
PDLIM2-207ENST00000409417 MARCH10Q8NA82 808 aaPredicted RBP26.84■■□□□ 1.89
PDLIM2-207ENST00000409417 MEGF6O75095 1541 aa26.82■■□□□ 1.88
PDLIM2-207ENST00000409417 OVOS2A0A0G2JMS6 1433 aa26.81■■□□□ 1.88
PDLIM2-207ENST00000409417 IGSF1Q8N6C5 1336 aa26.81■■□□□ 1.88
PDLIM2-207ENST00000409417 TATP17735 454 aaPredicted RBP26.81■■□□□ 1.88
PDLIM2-207ENST00000409417 IL13P35225 146 aa26.81■■□□□ 1.88
PDLIM2-207ENST00000409417 PPP2R1AP30153 589 aa26.8■■□□□ 1.88
PDLIM2-207ENST00000409417 ZCRB1Q8TBF4 217 aaKnown RBP26.8■■□□□ 1.88
PDLIM2-207ENST00000409417 PARD3Q8TEW0 1356 aa26.8■■□□□ 1.88
PDLIM2-207ENST00000409417 BCL9O00512 1426 aa26.78■■□□□ 1.88
PDLIM2-207ENST00000409417 DIAPH1O60610 1272 aaKnown RBP26.76■■□□□ 1.87
PDLIM2-207ENST00000409417 SF3B2Q13435 895 aaKnown RBP26.76■■□□□ 1.87
PDLIM2-207ENST00000409417 TRIM37O94972 964 aa26.75■■□□□ 1.87
PDLIM2-207ENST00000409417 DDX54Q8TDD1 881 aaKnown RBP26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms