RNA–Protein interactions for RNA: ENST00000407019.6

NUP50-203, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 2,059 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-203ENST00000407019 TMEM57Q8N5G2 664 aa21.41■■□□□ 1.02
NUP50-203ENST00000407019 RRS1Q15050 365 aaKnown RBP21.4■■□□□ 1.02
NUP50-203ENST00000407019 BRPF1P55201 1214 aaPredicted RBP21.4■■□□□ 1.02
NUP50-203ENST00000407019 IFT57Q9NWB7 429 aa21.4■■□□□ 1.02
NUP50-203ENST00000407019 SEC24BO95487 1268 aa21.39■■□□□ 1.01
NUP50-203ENST00000407019 GNAI1P63096 354 aa21.39■■□□□ 1.01
NUP50-203ENST00000407019 LMOD3Q0VAK6 560 aa21.39■■□□□ 1.01
NUP50-203ENST00000407019 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.38■■□□□ 1.01
NUP50-203ENST00000407019 TOPAZ1Q8N9V7 1692 aa21.38■■□□□ 1.01
NUP50-203ENST00000407019 NRKQ7Z2Y5 1582 aa21.38■■□□□ 1.01
NUP50-203ENST00000407019 THUMPD2Q9BTF0 503 aaKnown RBP21.38■■□□□ 1.01
NUP50-203ENST00000407019 ZBTB40Q9NUA8 1239 aa21.37■■□□□ 1.01
NUP50-203ENST00000407019 LTKP29376 864 aa21.36■■□□□ 1.01
NUP50-203ENST00000407019 ZNF853P0CG23 659 aa21.35■■□□□ 1.01
NUP50-203ENST00000407019 TTC21BQ7Z4L5 1316 aa21.35■■□□□ 1.01
NUP50-203ENST00000407019 VAMP4O75379 141 aa21.35■■□□□ 1.01
NUP50-203ENST00000407019 UPF2Q9HAU5 1272 aaKnown RBP21.35■■□□□ 1.01
NUP50-203ENST00000407019 PLEKHG3A1L390 1219 aa21.33■■□□□ 1.01
NUP50-203ENST00000407019 MBIPQ9NS73 344 aa21.33■■□□□ 1.01
NUP50-203ENST00000407019 ACEP12821 1306 aa21.33■■□□□ 1.01
NUP50-203ENST00000407019 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1.01
NUP50-203ENST00000407019 OVOS2Q6IE36 1432 aa21.33■■□□□ 1.01
NUP50-203ENST00000407019 SMC5Q8IY18 1101 aa21.33■■□□□ 1
NUP50-203ENST00000407019 MRPL50Q8N5N7 158 aaKnown RBP21.33■■□□□ 1
NUP50-203ENST00000407019 PTCH1Q13635 1447 aa21.33■■□□□ 1
NUP50-203ENST00000407019 ARHGAP45Q92619 1136 aa21.32■■□□□ 1
NUP50-203ENST00000407019 USP6P35125 1406 aa21.32■■□□□ 1
NUP50-203ENST00000407019 DLG5Q8TDM6 1919 aa21.32■■□□□ 1
NUP50-203ENST00000407019 TSPYL6Q8N831 410 aa21.32■■□□□ 1
NUP50-203ENST00000407019 CFAP44Q96MT7 982 aa21.32■■□□□ 1
NUP50-203ENST00000407019 PTPRUQ92729 1446 aa21.31■■□□□ 1
NUP50-203ENST00000407019 EID1Q9Y6B2 187 aa21.31■■□□□ 1
NUP50-203ENST00000407019 PIK3R4Q99570 1358 aa21.3■■□□□ 1
NUP50-203ENST00000407019 EIF4A2Q14240 407 aaKnown RBP21.3■■□□□ 1
NUP50-203ENST00000407019 NFKBIBQ15653 356 aa21.3■■□□□ 1
NUP50-203ENST00000407019 CHMP4BQ9H444 224 aaKnown RBP21.3■■□□□ 1
NUP50-203ENST00000407019 CEBPAP49715 358 aaPredicted RBP21.29■■□□□ 1
NUP50-203ENST00000407019 BECN1Q14457 450 aa21.29■■□□□ 1
NUP50-203ENST00000407019 TBC1D32Q96NH3 1257 aa21.29■■□□□ 1
NUP50-203ENST00000407019 BCL11AQ9H165 835 aa21.29■■□□□ 1
NUP50-203ENST00000407019 SLIT1O75093 1534 aa21.29■■□□□ 1
NUP50-203ENST00000407019 TWISTNBQ3B726 338 aaPredicted RBP21.28■■□□□ 1
NUP50-203ENST00000407019 SLC26A8Q96RN1 970 aa21.28■■□□□ 1
NUP50-203ENST00000407019 NALCNQ8IZF0 1738 aa21.28■■□□□ 1
NUP50-203ENST00000407019 NUTM2FA1L443 756 aa21.28■■□□□ 1
NUP50-203ENST00000407019 ARHGAP23Q9P227 1491 aa21.28■■□□□ 1
NUP50-203ENST00000407019 FAM83GA6ND36 823 aa21.27■□□□□ 0.99
NUP50-203ENST00000407019 USP31Q70CQ4 1352 aa21.26■□□□□ 0.99
NUP50-203ENST00000407019 ELL2O00472 640 aaPredicted RBP21.26■□□□□ 0.99
NUP50-203ENST00000407019 SULT6B1Q6IMI4 303 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 AEBP1Q8IUX7 1158 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 C8orf58Q8NAV2 365 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 ABCC4O15439 1325 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 SSH2Q76I76 1423 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 ZBTB7BO15156 539 aaPredicted RBP21.25■□□□□ 0.99
NUP50-203ENST00000407019 NUCB1Q02818 461 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 AMOTL2Q9Y2J4 779 aa21.25■□□□□ 0.99
NUP50-203ENST00000407019 DCTN1Q14203 1278 aa21.24■□□□□ 0.99
NUP50-203ENST00000407019 PEAK1Q9H792 1746 aa21.24■□□□□ 0.99
NUP50-203ENST00000407019 TBX22Q9Y458 520 aa21.24■□□□□ 0.99
NUP50-203ENST00000407019 TTC21AQ8NDW8 1320 aa21.23■□□□□ 0.99
NUP50-203ENST00000407019 API5Q9BZZ5 524 aaKnown RBP21.22■□□□□ 0.99
NUP50-203ENST00000407019 DIP2AQ14689 1571 aa21.22■□□□□ 0.99
NUP50-203ENST00000407019 RGPD1P0DJD0 1748 aa21.22■□□□□ 0.99
NUP50-203ENST00000407019 HSP90AB2PQ58FF8 381 aa21.2■□□□□ 0.99
NUP50-203ENST00000407019 FER1L4A9Z1Z3 1794 aa21.2■□□□□ 0.98
NUP50-203ENST00000407019 CHD1LQ86WJ1 897 aa21.2■□□□□ 0.98
NUP50-203ENST00000407019 GCC1Q96CN9 775 aa21.19■□□□□ 0.98
NUP50-203ENST00000407019 LNPKQ9C0E8 428 aa21.19■□□□□ 0.98
NUP50-203ENST00000407019 ARHGEF10O15013 1369 aa21.18■□□□□ 0.98
NUP50-203ENST00000407019 HAP1P54257 671 aaPredicted RBP21.18■□□□□ 0.98
NUP50-203ENST00000407019 PLPPR3Q6T4P5 718 aa21.17■□□□□ 0.98
NUP50-203ENST00000407019 THEMISQ8N1K5 641 aaPredicted RBP21.17■□□□□ 0.98
NUP50-203ENST00000407019 C1orf115Q9H7X2 142 aa21.17■□□□□ 0.98
NUP50-203ENST00000407019 KIF24Q5T7B8 1368 aa21.17■□□□□ 0.98
NUP50-203ENST00000407019 MFAP1P55081 439 aaKnown RBP21.17■□□□□ 0.98
NUP50-203ENST00000407019 CHL1O00533 1208 aa21.16■□□□□ 0.98
NUP50-203ENST00000407019 SOX12O15370 315 aa21.16■□□□□ 0.98
NUP50-203ENST00000407019 C22orf23Q9BZE7 217 aa21.16■□□□□ 0.98
NUP50-203ENST00000407019 MAP3K19Q56UN5 1328 aa21.16■□□□□ 0.98
NUP50-203ENST00000407019 NGDNQ8NEJ9 315 aaKnown RBP21.16■□□□□ 0.98
NUP50-203ENST00000407019 SBNO1A3KN83 1393 aa21.16■□□□□ 0.98
NUP50-203ENST00000407019 FMN2Q9NZ56 1722 aa21.16■□□□□ 0.98
NUP50-203ENST00000407019 XRN1Q8IZH2 1706 aaKnown RBP21.15■□□□□ 0.98
NUP50-203ENST00000407019 RIMS1Q86UR5 1692 aaKnown RBP21.15■□□□□ 0.98
NUP50-203ENST00000407019 FLT4P35916 1363 aa21.15■□□□□ 0.98
NUP50-203ENST00000407019 KIAA0232Q92628 1395 aa21.15■□□□□ 0.98
NUP50-203ENST00000407019 MCM10Q7L590 875 aa21.14■□□□□ 0.98
NUP50-203ENST00000407019 TBC1D2Q9BYX2 928 aa21.14■□□□□ 0.98
NUP50-203ENST00000407019 FRAT2O75474 233 aaPredicted RBP21.14■□□□□ 0.97
NUP50-203ENST00000407019 ANKRD45Q5TZF3 282 aa21.14■□□□□ 0.97
NUP50-203ENST00000407019 SIRT2Q8IXJ6 389 aa21.13■□□□□ 0.97
NUP50-203ENST00000407019 ANKARQ7Z5J8 1434 aa21.12■□□□□ 0.97
NUP50-203ENST00000407019 CRB1P82279 1406 aa21.12■□□□□ 0.97
NUP50-203ENST00000407019 GSE1Q14687 1217 aa21.11■□□□□ 0.97
NUP50-203ENST00000407019 BMP2KLQ5H9B9 411 aa21.11■□□□□ 0.97
NUP50-203ENST00000407019 SLKQ9H2G2 1235 aaPredicted RBP21.11■□□□□ 0.97
NUP50-203ENST00000407019 RGPD8O14715 1765 aaPredicted RBP21.11■□□□□ 0.97
NUP50-203ENST00000407019 PIK3C2AO00443 1686 aa21.11■□□□□ 0.97
NUP50-203ENST00000407019 KRT24Q2M2I5 525 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms