RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 INTS3Q68E01 1043 aaKnown RBP14.56□□□□□ -0.08
HMGB1-206ENST00000405805 ZRANB1Q9UGI0 708 aa14.56□□□□□ -0.08
HMGB1-206ENST00000405805 SLC4A2P04920 1241 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 AMPHP49418 695 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 EXOC6BQ9Y2D4 811 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 ATAD2Q6PL18 1390 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 F6X3S4 739 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 RBM27Q9P2N5 1060 aaKnown RBP14.55□□□□□ -0.08
HMGB1-206ENST00000405805 NINLQ9Y2I6 1382 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 EIF2AK4Q9P2K8 1649 aaKnown RBP14.55□□□□□ -0.08
HMGB1-206ENST00000405805 DTNBO60941 627 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 TAF7LQ5H9L4 462 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 NME9Q86XW9 330 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 FYB1O15117 783 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 LMOD3Q0VAK6 560 aa14.55□□□□□ -0.08
HMGB1-206ENST00000405805 UPF3BQ9BZI7 483 aaKnown RBP14.55□□□□□ -0.08
HMGB1-206ENST00000405805 TRMT2AQ8IZ69 625 aaKnown RBP14.54□□□□□ -0.08
HMGB1-206ENST00000405805 GAS2L2Q8NHY3 880 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 PHACTR3Q96KR7 559 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 CCDC27Q2M243 656 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 GCC1Q96CN9 775 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 GDPD2Q9HCC8 539 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 UQCRHLA0A096LP55 91 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 REC8O95072 547 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 UQCRHP07919 91 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 CEBPAP49715 358 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-206ENST00000405805 HAP1P54257 671 aaPredicted RBP14.54□□□□□ -0.08
HMGB1-206ENST00000405805 DRC7Q8IY82 874 aa14.54□□□□□ -0.08
HMGB1-206ENST00000405805 NCKAP5LQ9HCH0 1330 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 NPATQ14207 1427 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 CHAMP1Q96JM3 812 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 GOLGA6L4A6NEF3 574 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 TSPYL4Q9UJ04 414 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 EID1Q9Y6B2 187 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 NUCB2P80303 420 aa14.53□□□□□ -0.08
HMGB1-206ENST00000405805 PIK3C2GO75747 1445 aa14.52□□□□□ -0.08
HMGB1-206ENST00000405805 UHRF1BP1LA0JNW5 1464 aa14.52□□□□□ -0.09
HMGB1-206ENST00000405805 SYCE3A1L190 88 aa14.52□□□□□ -0.09
HMGB1-206ENST00000405805 XPCQ01831 940 aaPredicted RBP14.52□□□□□ -0.09
HMGB1-206ENST00000405805 DDX54Q8TDD1 881 aaKnown RBP14.52□□□□□ -0.09
HMGB1-206ENST00000405805 IL1RAPL2Q9NP60 686 aa14.52□□□□□ -0.09
HMGB1-206ENST00000405805 IGSF3O75054 1194 aa14.51□□□□□ -0.09
HMGB1-206ENST00000405805 NUCB1Q02818 461 aa14.51□□□□□ -0.09
HMGB1-206ENST00000405805 ZBTB40Q9NUA8 1239 aa14.51□□□□□ -0.09
HMGB1-206ENST00000405805 C8orf58Q8NAV2 365 aa14.51□□□□□ -0.09
HMGB1-206ENST00000405805 OTUD7AQ8TE49 926 aaPredicted RBP14.51□□□□□ -0.09
HMGB1-206ENST00000405805 FCHSD2O94868 740 aa14.5□□□□□ -0.09
HMGB1-206ENST00000405805 NFE2L2Q16236 605 aa14.5□□□□□ -0.09
HMGB1-206ENST00000405805 MBIPQ9NS73 344 aa14.5□□□□□ -0.09
HMGB1-206ENST00000405805 POLR3AO14802 1390 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-206ENST00000405805 PATL2C9JE40 543 aaKnown RBP14.5□□□□□ -0.09
HMGB1-206ENST00000405805 HDAC1Q13547 482 aaPredicted RBP14.5□□□□□ -0.09
HMGB1-206ENST00000405805 RABEP1Q15276 862 aa14.5□□□□□ -0.09
HMGB1-206ENST00000405805 TRIM35Q9UPQ4 493 aa14.5□□□□□ -0.09
HMGB1-206ENST00000405805 BAG4O95429 457 aaKnown RBP14.49□□□□□ -0.09
HMGB1-206ENST00000405805 NUDT16Q96DE0 195 aaKnown RBP14.49□□□□□ -0.09
HMGB1-206ENST00000405805 CT47B1P0C2W7 299 aaPredicted RBP14.48□□□□□ -0.09
HMGB1-206ENST00000405805 PRDM15P57071 1507 aaPredicted RBP14.48□□□□□ -0.09
HMGB1-206ENST00000405805 SMC5Q8IY18 1101 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 ZFYVE16Q7Z3T8 1539 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 PTPRTO14522 1441 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 CD2BP2O95400 341 aaKnown RBP14.48□□□□□ -0.09
HMGB1-206ENST00000405805 GAS2L3Q86XJ1 694 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 ZGPATQ8N5A5 531 aaKnown RBP14.48□□□□□ -0.09
HMGB1-206ENST00000405805 ANTXR1Q9H6X2 564 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 TRPM1Q7Z4N2 1603 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 BMP2KLQ5H9B9 411 aa14.48□□□□□ -0.09
HMGB1-206ENST00000405805 MTERF4Q7Z6M4 381 aaKnown RBP14.48□□□□□ -0.09
HMGB1-206ENST00000405805 VPS37CA5D8V6 355 aaPredicted RBP14.47□□□□□ -0.09
HMGB1-206ENST00000405805 YEATS2Q9ULM3 1422 aa14.47□□□□□ -0.09
HMGB1-206ENST00000405805 SYAP1Q96A49 352 aaPredicted RBP14.47□□□□□ -0.09
HMGB1-206ENST00000405805 RBM33Q96EV2 1170 aaKnown RBP14.47□□□□□ -0.09
HMGB1-206ENST00000405805 IQGAP3Q86VI3 1631 aa14.47□□□□□ -0.09
HMGB1-206ENST00000405805 ERVK-7P63135 1459 aa14.46□□□□□ -0.09
HMGB1-206ENST00000405805 FIBPO43427 364 aa14.46□□□□□ -0.09
HMGB1-206ENST00000405805 CFAP44Q96MT7 982 aa14.46□□□□□ -0.09
HMGB1-206ENST00000405805 CCDC173Q0VFZ6 552 aa14.46□□□□□ -0.09
HMGB1-206ENST00000405805 ZNF526Q8TF50 670 aaPredicted RBP14.46□□□□□ -0.09
HMGB1-206ENST00000405805 A0A1W2PP64 1363 aa14.46□□□□□ -0.09
HMGB1-206ENST00000405805 CLCN1P35523 988 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 MEIS3Q99687 375 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 CIZ1Q9ULV3 898 aaPredicted RBP14.45□□□□□ -0.1
HMGB1-206ENST00000405805 CCDC61Q9Y6R9 512 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 TRPM2O94759 1503 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 POGZQ7Z3K3 1410 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 ERICH4A6NGS2 130 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 SURF6O75683 361 aaKnown RBP14.45□□□□□ -0.1
HMGB1-206ENST00000405805 FOSBP53539 338 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 ANKRD36BQ8N2N9 1353 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 PLXNC1O60486 1568 aa14.45□□□□□ -0.1
HMGB1-206ENST00000405805 UNC13BO14795 1591 aa14.44□□□□□ -0.1
HMGB1-206ENST00000405805 VAMP4O75379 141 aa14.44□□□□□ -0.1
HMGB1-206ENST00000405805 ERC2O15083 957 aa14.44□□□□□ -0.1
HMGB1-206ENST00000405805 PKP1Q13835 747 aa14.44□□□□□ -0.1
HMGB1-206ENST00000405805 ZSCAN30Q86W11 494 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 FBXW7Q969H0 707 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 CLTCL1P53675 1640 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 SDSP20132 328 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 NUTM1Q86Y26 1132 aa14.43□□□□□ -0.1
HMGB1-206ENST00000405805 A0A0G2JS52 829 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms