RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 PHACTR3Q96KR7 559 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 PLEKHF1Q96S99 279 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 PXDNQ92626 1479 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 LTBP4Q8N2S1 1624 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 SOS2Q07890 1332 aaPredicted RBP4.87□□□□□ -1.63
RTN4-208ENST00000404909 UBAP1LF5GYI3 381 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 RIPK4P57078 832 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 GOLGA2Q08379 1002 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 CHRNA2Q15822 529 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 ARHGEF25Q86VW2 580 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 EYA1Q99502 592 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 SUPT16HQ9Y5B9 1047 aaKnown RBP4.87□□□□□ -1.63
RTN4-208ENST00000404909 ARHGEF10O15013 1369 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 USP19O94966 1318 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 TOM1O60784 492 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 TMPOP42166 694 aaKnown RBP4.87□□□□□ -1.63
RTN4-208ENST00000404909 PDE3BQ13370 1112 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 WWC1Q8IX03 1113 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 USHBP1Q8N6Y0 703 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 AXIN2Q9Y2T1 843 aa4.87□□□□□ -1.63
RTN4-208ENST00000404909 PEAK1Q9H792 1746 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 LRRC59Q96AG4 307 aaKnown RBP4.86□□□□□ -1.63
RTN4-208ENST00000404909 TRPM3Q9HCF6 1732 aaPredicted RBP4.86□□□□□ -1.63
RTN4-208ENST00000404909 SPINK5Q9NQ38 1064 aaPredicted RBP4.86□□□□□ -1.63
RTN4-208ENST00000404909 PRDM11Q9NQV5 511 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 ZNF521Q96K83 1311 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 CSB-PGBD3P0DP91 1061 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 NGEFQ8N5V2 710 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 ANKRD24Q8TF21 1146 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 NFAT5O94916 1531 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 KIF24Q5T7B8 1368 aa4.86□□□□□ -1.63
RTN4-208ENST00000404909 MARF1Q9Y4F3 1742 aaKnown RBP4.85□□□□□ -1.63
RTN4-208ENST00000404909 NBPF6Q5VWK0 638 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 NBPF4Q96M43 638 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 RTL1A6NKG5 1358 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 KIAA0232Q92628 1395 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 NEFLP07196 543 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 IRX6P78412 446 aaPredicted RBP4.85□□□□□ -1.63
RTN4-208ENST00000404909 NFE2L2Q16236 605 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 NLRP2Q9NX02 1062 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 IGSF1Q8N6C5 1336 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 MED1Q15648 1581 aaPredicted RBP4.85□□□□□ -1.63
RTN4-208ENST00000404909 E9PSI1 815 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 SLFN5Q08AF3 891 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 THUMPD2Q9BTF0 503 aaKnown RBP4.85□□□□□ -1.63
RTN4-208ENST00000404909 TRIM35Q9UPQ4 493 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 LAS1LQ9Y4W2 734 aaKnown RBP4.85□□□□□ -1.63
RTN4-208ENST00000404909 SLIT3O75094 1523 aa4.85□□□□□ -1.63
RTN4-208ENST00000404909 ALS2Q96Q42 1657 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 FAM83GA6ND36 823 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 DCTN1Q14203 1278 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 DUSP27Q5VZP5 1158 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 IQSEC2Q5JU85 1478 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 FKBP8Q14318 412 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 CCDC27Q2M243 656 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 LTN1O94822 1766 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 ROBO1Q9Y6N7 1651 aa4.84□□□□□ -1.63
RTN4-208ENST00000404909 USP54Q70EL1 1684 aa4.84□□□□□ -1.64
RTN4-208ENST00000404909 WDR63Q8IWG1 891 aa4.84□□□□□ -1.64
RTN4-208ENST00000404909 CERKQ8TCT0 537 aa4.84□□□□□ -1.64
RTN4-208ENST00000404909 RCAN3Q9UKA8 241 aa4.84□□□□□ -1.64
RTN4-208ENST00000404909 ERBB3P21860 1342 aa4.84□□□□□ -1.64
RTN4-208ENST00000404909 MTHFSDQ2M296 383 aaKnown RBP4.83□□□□□ -1.64
RTN4-208ENST00000404909 TSR2Q969E8 191 aaKnown RBP4.83□□□□□ -1.64
RTN4-208ENST00000404909 STRN4Q9NRL3 753 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 NUTM2BA6NNL0 878 aaPredicted RBP4.83□□□□□ -1.64
RTN4-208ENST00000404909 NUTM2EB1AL46 878 aaPredicted RBP4.83□□□□□ -1.64
RTN4-208ENST00000404909 MCM10Q7L590 875 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 NUTM2AQ8IVF1 878 aaPredicted RBP4.83□□□□□ -1.64
RTN4-208ENST00000404909 MYH16Q9H6N6 1097 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 KDRP35968 1356 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 ADAMTS2O95450 1211 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 EVA1CP58658 441 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 LMOD3Q0VAK6 560 aa4.83□□□□□ -1.64
RTN4-208ENST00000404909 RTF1Q92541 710 aaKnown RBP4.83□□□□□ -1.64
RTN4-208ENST00000404909 TOM1L2Q6ZVM7 507 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 USP35Q9P2H5 1018 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 CPDO75976 1380 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 GAS2L2Q8NHY3 880 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 NHSL1Q5SYE7 1610 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 NCBP3Q53F19 620 aaKnown RBP4.82□□□□□ -1.64
RTN4-208ENST00000404909 TRMT2AQ8IZ69 625 aaKnown RBP4.82□□□□□ -1.64
RTN4-208ENST00000404909 RAPGEF4Q8WZA2 1011 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 CALD1Q05682 793 aaKnown RBP4.82□□□□□ -1.64
RTN4-208ENST00000404909 BTG4Q9NY30 223 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 FANCIQ9NVI1 1328 aa4.82□□□□□ -1.64
RTN4-208ENST00000404909 PHRF1Q9P1Y6 1649 aaKnown RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 GNAT3A8MTJ3 354 aa4.81□□□□□ -1.64
RTN4-208ENST00000404909 PLIN1O60240 522 aa4.81□□□□□ -1.64
RTN4-208ENST00000404909 PLEKHO1Q53GL0 409 aaPredicted RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 ZNF530Q6P9A1 599 aaPredicted RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 EXOSC9Q06265 439 aaKnown RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 LARP1Q6PKG0 1096 aaKnown RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 MIS18AQ9NYP9 233 aa4.81□□□□□ -1.64
RTN4-208ENST00000404909 RGPD1P0DJD0 1748 aa4.81□□□□□ -1.64
RTN4-208ENST00000404909 AHDC1Q5TGY3 1603 aaPredicted RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 ELL2O00472 640 aaPredicted RBP4.81□□□□□ -1.64
RTN4-208ENST00000404909 GNAI1P63096 354 aa4.81□□□□□ -1.64
RTN4-208ENST00000404909 BCL2L13Q9BXK5 485 aa4.81□□□□□ -1.64
RTN4-208ENST00000404909 IL16Q14005 1332 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms