RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 TLL2Q9Y6L7 1015 aa9.44□□□□□ -0.9
HMGB3P19-201ENST00000403971 NISCHQ9Y2I1 1504 aa9.44□□□□□ -0.9
HMGB3P19-201ENST00000403971 ARID5BQ14865 1188 aa9.43□□□□□ -0.9
HMGB3P19-201ENST00000403971 CDCA8Q53HL2 280 aa9.43□□□□□ -0.9
HMGB3P19-201ENST00000403971 ZNF592Q92610 1267 aa9.43□□□□□ -0.9
HMGB3P19-201ENST00000403971 RAB15P59190 212 aa9.42□□□□□ -0.9
HMGB3P19-201ENST00000403971 PLPP7Q8NBV4 271 aa9.42□□□□□ -0.9
HMGB3P19-201ENST00000403971 CCDC85AQ96PX6 553 aaPredicted RBP9.42□□□□□ -0.9
HMGB3P19-201ENST00000403971 USP17L5A8MUK1 530 aa9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 SIAH2O43255 324 aa9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 SRPK2P78362 688 aaKnown RBP9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 ZNF697Q5TEC3 545 aa9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 VASH1Q7L8A9 365 aaPredicted RBP9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 NFATC2IPQ8NCF5 419 aa9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 MRGPRX2Q96LB1 330 aa9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 KCTD15Q96SI1 283 aaPredicted RBP9.41□□□□□ -0.9
HMGB3P19-201ENST00000403971 USP17L3A6NCW0 530 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 USP17L4A6NCW7 530 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 ESPNB1AK53 854 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 WNT7AO00755 349 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 FOXC1Q12948 553 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 NBPF20Q3BBV1 942 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 USP17L2Q6R6M4 530 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 USP17L1Q7RTZ2 530 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 PBXIP1Q96AQ6 731 aa9.4□□□□□ -0.9
HMGB3P19-201ENST00000403971 NCOA4Q13772 614 aa9.39□□□□□ -0.91
HMGB3P19-201ENST00000403971 TRAF7Q6Q0C0 670 aa9.39□□□□□ -0.91
HMGB3P19-201ENST00000403971 ZNF598Q86UK7 904 aaKnown RBP9.39□□□□□ -0.91
HMGB3P19-201ENST00000403971 CDCA7Q9BWT1 371 aaPredicted RBP9.39□□□□□ -0.91
HMGB3P19-201ENST00000403971 CHIC2Q9UKJ5 165 aa9.39□□□□□ -0.91
HMGB3P19-201ENST00000403971 INTS6LQ5JSJ4 861 aaKnown RBP9.38□□□□□ -0.91
HMGB3P19-201ENST00000403971 CDK15Q96Q40 435 aa9.38□□□□□ -0.91
HMGB3P19-201ENST00000403971 PKD2L1Q9P0L9 805 aa9.38□□□□□ -0.91
HMGB3P19-201ENST00000403971 CDV3Q9UKY7 258 aaKnown RBP9.38□□□□□ -0.91
HMGB3P19-201ENST00000403971 DOLKQ9UPQ8 538 aa9.38□□□□□ -0.91
HMGB3P19-201ENST00000403971 MAP4K5Q9Y4K4 846 aa9.38□□□□□ -0.91
HMGB3P19-201ENST00000403971 FSHRP23945 695 aa9.37□□□□□ -0.91
HMGB3P19-201ENST00000403971 GRM5P41594 1212 aa9.37□□□□□ -0.91
HMGB3P19-201ENST00000403971 OXLD1Q5BKU9 147 aa9.37□□□□□ -0.91
HMGB3P19-201ENST00000403971 KANK4Q5T7N3 995 aaPredicted RBP9.37□□□□□ -0.91
HMGB3P19-201ENST00000403971 PLEKHM2Q8IWE5 1019 aa9.37□□□□□ -0.91
HMGB3P19-201ENST00000403971 PCDHB11Q9Y5F2 797 aa9.37□□□□□ -0.91
HMGB3P19-201ENST00000403971 PPP1R15AO75807 674 aaPredicted RBP9.36□□□□□ -0.91
HMGB3P19-201ENST00000403971 V9GY48 417 aaPredicted RBP9.36□□□□□ -0.91
HMGB3P19-201ENST00000403971 ERVH48-1M5A8F1 160 aa9.35□□□□□ -0.91
HMGB3P19-201ENST00000403971 RNF20Q5VTR2 975 aa9.35□□□□□ -0.91
HMGB3P19-201ENST00000403971 VRTNQ9H8Y1 702 aa9.35□□□□□ -0.91
HMGB3P19-201ENST00000403971 MKRN1Q9UHC7 482 aaKnown RBP9.35□□□□□ -0.91
HMGB3P19-201ENST00000403971 TNFRSF10AO00220 468 aa9.34□□□□□ -0.91
HMGB3P19-201ENST00000403971 ADH1CP00326 375 aa9.34□□□□□ -0.91
HMGB3P19-201ENST00000403971 MAP7D1Q3KQU3 841 aa9.34□□□□□ -0.91
HMGB3P19-201ENST00000403971 SEPT12Q8IYM1 358 aa9.34□□□□□ -0.91
HMGB3P19-201ENST00000403971 RETREG2Q8NC44 543 aa9.34□□□□□ -0.91
HMGB3P19-201ENST00000403971 ALDH1A1P00352 501 aa9.33□□□□□ -0.92
HMGB3P19-201ENST00000403971 NR3C2P08235 984 aa9.33□□□□□ -0.92
HMGB3P19-201ENST00000403971 EML3Q32P44 896 aa9.33□□□□□ -0.92
HMGB3P19-201ENST00000403971 MPNDQ8N594 471 aa9.33□□□□□ -0.92
HMGB3P19-201ENST00000403971 TMPRSS4Q9NRS4 437 aa9.33□□□□□ -0.92
HMGB3P19-201ENST00000403971 GDF9O60383 454 aa9.32□□□□□ -0.92
HMGB3P19-201ENST00000403971 SCTRP47872 440 aa9.32□□□□□ -0.92
HMGB3P19-201ENST00000403971 ACIN1Q9UKV3 1341 aaKnown RBP9.31□□□□□ -0.92
HMGB3P19-201ENST00000403971 CRTC2Q53ET0 693 aaPredicted RBP9.31□□□□□ -0.92
HMGB3P19-201ENST00000403971 TRIM67Q6ZTA4 783 aa9.31□□□□□ -0.92
HMGB3P19-201ENST00000403971 CARNS1A5YM72 827 aa9.3□□□□□ -0.92
HMGB3P19-201ENST00000403971 J3QL48 77 aa9.3□□□□□ -0.92
HMGB3P19-201ENST00000403971 LZTS3O60299 673 aaPredicted RBP9.3□□□□□ -0.92
HMGB3P19-201ENST00000403971 NOD1Q9Y239 953 aa9.3□□□□□ -0.92
HMGB3P19-201ENST00000403971 ATG7O95352 703 aa9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 RASA1P20936 1047 aa9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 CLDN10P78369 228 aa9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 NR5A1Q13285 461 aa9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 CCDC116Q8IYX3 515 aa9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 ZNF784Q8NCA9 323 aaPredicted RBP9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 SNIP1Q8TAD8 396 aaKnown RBP9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 CYLDQ9NQC7 956 aa9.29□□□□□ -0.92
HMGB3P19-201ENST00000403971 TTC24A2A3L6 582 aaPredicted RBP9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L15C9J2P7 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L10C9JJH3 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L13C9JLJ4 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L12C9JPN9 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L11C9JVI0 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L21D6R901 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L18D6R9N7 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L22D6RA61 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L17D6RBQ6 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L19D6RCP7 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L20D6RJB6 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 ATP5J2-PTCD1G3V325 749 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 GTF2IP78347 998 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP17L24Q0WX57 530 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 NNTQ13423 1086 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 PPP1R26Q5T8A7 1209 aaPredicted RBP9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 OGFOD1Q8N543 542 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 ZMIZ1Q9ULJ6 1067 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 KIAA1024Q9UPX6 916 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 WASF2Q9Y6W5 498 aa9.28□□□□□ -0.92
HMGB3P19-201ENST00000403971 USP4Q13107 963 aa9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 PTK7Q13308 1070 aa9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 LARP1Q6PKG0 1096 aaKnown RBP9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 CYP4X1Q8N118 509 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms