RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 GGNBP2Q9H3C7 697 aa26.54■■□□□ 1.84
RTN4-207ENST00000402434 LARP1Q6PKG0 1096 aaKnown RBP26.53■■□□□ 1.84
RTN4-207ENST00000402434 PANK3Q9H999 370 aa26.53■■□□□ 1.84
RTN4-207ENST00000402434 ABCC6O95255 1503 aa26.52■■□□□ 1.84
RTN4-207ENST00000402434 SEPT12Q8IYM1 358 aa26.51■■□□□ 1.83
RTN4-207ENST00000402434 FAM98CQ17RN3 349 aaKnown RBP26.5■■□□□ 1.83
RTN4-207ENST00000402434 CGNL1Q0VF96 1302 aa26.5■■□□□ 1.83
RTN4-207ENST00000402434 KIF20BQ96Q89 1820 aa26.48■■□□□ 1.83
RTN4-207ENST00000402434 CRB1P82279 1406 aa26.47■■□□□ 1.83
RTN4-207ENST00000402434 LTN1O94822 1766 aa26.47■■□□□ 1.83
RTN4-207ENST00000402434 BARGINQ6ZT62 677 aa26.47■■□□□ 1.83
RTN4-207ENST00000402434 WDR17Q8IZU2 1322 aa26.47■■□□□ 1.83
RTN4-207ENST00000402434 RGPD5Q99666 1765 aa26.46■■□□□ 1.83
RTN4-207ENST00000402434 FBLN1P23142 703 aa26.46■■□□□ 1.83
RTN4-207ENST00000402434 USP35Q9P2H5 1018 aa26.46■■□□□ 1.83
RTN4-207ENST00000402434 THRAP3Q9Y2W1 955 aaKnown RBP26.46■■□□□ 1.83
RTN4-207ENST00000402434 MAP3K19Q56UN5 1328 aa26.45■■□□□ 1.82
RTN4-207ENST00000402434 TCP11L2Q8N4U5 519 aa26.45■■□□□ 1.82
RTN4-207ENST00000402434 CCDC7Q96M83 1385 aa26.45■■□□□ 1.82
RTN4-207ENST00000402434 WASHC2AQ641Q2 1341 aa26.44■■□□□ 1.82
RTN4-207ENST00000402434 IP6K1Q92551 441 aa26.44■■□□□ 1.82
RTN4-207ENST00000402434 TOM1L2Q6ZVM7 507 aa26.42■■□□□ 1.82
RTN4-207ENST00000402434 THSD7AQ9UPZ6 1657 aa26.42■■□□□ 1.82
RTN4-207ENST00000402434 BRWD3Q6RI45 1802 aa26.42■■□□□ 1.82
RTN4-207ENST00000402434 ERBB3P21860 1342 aa26.42■■□□□ 1.82
RTN4-207ENST00000402434 UPF1Q92900 1129 aaKnown RBP eCLIP26.42■■□□□ 1.823e-6■■□□□ 12.5
RTN4-207ENST00000402434 BLMP54132 1417 aaPredicted RBP26.41■■□□□ 1.82
RTN4-207ENST00000402434 A0A0G2JS52 829 aa26.41■■□□□ 1.82
RTN4-207ENST00000402434 MYT1Q01538 1121 aa26.41■■□□□ 1.82
RTN4-207ENST00000402434 CARD10Q9BWT7 1032 aa26.41■■□□□ 1.82
RTN4-207ENST00000402434 RRS1Q15050 365 aaKnown RBP26.4■■□□□ 1.82
RTN4-207ENST00000402434 KRT27Q7Z3Y8 459 aa26.4■■□□□ 1.82
RTN4-207ENST00000402434 CSB-PGBD3P0DP91 1061 aa26.39■■□□□ 1.82
RTN4-207ENST00000402434 HOXC9P31274 260 aa26.38■■□□□ 1.81
RTN4-207ENST00000402434 AMPHP49418 695 aa26.38■■□□□ 1.81
RTN4-207ENST00000402434 KNSTRNQ9Y448 316 aa26.38■■□□□ 1.81
RTN4-207ENST00000402434 ANKRD24Q8TF21 1146 aa26.37■■□□□ 1.81
RTN4-207ENST00000402434 RTL1A6NKG5 1358 aa26.37■■□□□ 1.81
RTN4-207ENST00000402434 NSD2O96028 1365 aa26.37■■□□□ 1.81
RTN4-207ENST00000402434 PER1O15534 1290 aaPredicted RBP26.36■■□□□ 1.81
RTN4-207ENST00000402434 KIF24Q5T7B8 1368 aa26.35■■□□□ 1.81
RTN4-207ENST00000402434 EP400Q96L91 3159 aa26.35■■□□□ 1.81
RTN4-207ENST00000402434 AMER1Q5JTC6 1135 aaPredicted RBP26.34■■□□□ 1.81
RTN4-207ENST00000402434 ANKRD26Q9UPS8 1709 aa26.34■■□□□ 1.81
RTN4-207ENST00000402434 CDCA7Q9BWT1 371 aaPredicted RBP26.32■■□□□ 1.8
RTN4-207ENST00000402434 NLRP2Q9NX02 1062 aa26.32■■□□□ 1.8
RTN4-207ENST00000402434 ZEB1P37275 1124 aaPredicted RBP26.31■■□□□ 1.8
RTN4-207ENST00000402434 EMILIN1Q9Y6C2 1016 aa26.3■■□□□ 1.8
RTN4-207ENST00000402434 FLT4P35916 1363 aa26.3■■□□□ 1.8
RTN4-207ENST00000402434 PARP4Q9UKK3 1724 aaKnown RBP26.29■■□□□ 1.8
RTN4-207ENST00000402434 INSRP06213 1382 aa26.29■■□□□ 1.8
RTN4-207ENST00000402434 DISP2A7MBM2 1401 aa26.29■■□□□ 1.8
RTN4-207ENST00000402434 LTV1Q96GA3 475 aaPredicted RBP26.29■■□□□ 1.8
RTN4-207ENST00000402434 POLKQ9UBT6 870 aa26.29■■□□□ 1.8
RTN4-207ENST00000402434 PEAK1Q9H792 1746 aa26.28■■□□□ 1.8
RTN4-207ENST00000402434 HSP90AB2PQ58FF8 381 aa26.28■■□□□ 1.8
RTN4-207ENST00000402434 CCDC125Q86Z20 511 aa26.28■■□□□ 1.8
RTN4-207ENST00000402434 MAP2P11137 1827 aaKnown RBP26.27■■□□□ 1.8
RTN4-207ENST00000402434 PDE3BQ13370 1112 aa26.27■■□□□ 1.8
RTN4-207ENST00000402434 MORC1Q86VD1 984 aa26.26■■□□□ 1.79
RTN4-207ENST00000402434 FAM208AQ9UK61 1670 aaKnown RBP26.25■■□□□ 1.79
RTN4-207ENST00000402434 TNNT2P45379 298 aaPredicted RBP26.25■■□□□ 1.79
RTN4-207ENST00000402434 FAM182BQ5T319 152 aa26.25■■□□□ 1.79
RTN4-207ENST00000402434 WNK3Q9BYP7 1800 aa26.25■■□□□ 1.79
RTN4-207ENST00000402434 DDB1Q16531 1140 aa26.24■■□□□ 1.79
RTN4-207ENST00000402434 PPM1GO15355 546 aaPredicted RBP26.23■■□□□ 1.79
RTN4-207ENST00000402434 NPC1L1Q9UHC9 1359 aa26.23■■□□□ 1.79
RTN4-207ENST00000402434 FAM196AQ6ZSG2 479 aa26.23■■□□□ 1.79
RTN4-207ENST00000402434 LRRC37A3O60309 1634 aa26.22■■□□□ 1.79
RTN4-207ENST00000402434 IL2RBP14784 551 aa26.22■■□□□ 1.79
RTN4-207ENST00000402434 SMG6Q86US8 1419 aaKnown RBP26.21■■□□□ 1.79
RTN4-207ENST00000402434 NBPF6Q5VWK0 638 aa26.21■■□□□ 1.79
RTN4-207ENST00000402434 NBPF4Q96M43 638 aa26.21■■□□□ 1.79
RTN4-207ENST00000402434 EXOC5O00471 708 aa26.2■■□□□ 1.78
RTN4-207ENST00000402434 RGPD2P0DJD1 1756 aa26.18■■□□□ 1.78
RTN4-207ENST00000402434 CC2D1BQ5T0F9 858 aaKnown RBP26.17■■□□□ 1.78
RTN4-207ENST00000402434 TNS2Q63HR2 1409 aa26.16■■□□□ 1.78
RTN4-207ENST00000402434 MARCH10Q8NA82 808 aaPredicted RBP26.16■■□□□ 1.78
RTN4-207ENST00000402434 OVOS2A0A0G2JMS6 1433 aa26.14■■□□□ 1.78
RTN4-207ENST00000402434 BCL9O00512 1426 aa26.13■■□□□ 1.77
RTN4-207ENST00000402434 SF3B2Q13435 895 aaKnown RBP26.12■■□□□ 1.77
RTN4-207ENST00000402434 EIF4A2Q14240 407 aaKnown RBP26.11■■□□□ 1.77
RTN4-207ENST00000402434 USHBP1Q8N6Y0 703 aa26.11■■□□□ 1.77
RTN4-207ENST00000402434 NCAPD2Q15021 1401 aa26.11■■□□□ 1.77
RTN4-207ENST00000402434 TRIM37O94972 964 aa26.1■■□□□ 1.77
RTN4-207ENST00000402434 EYA1Q99502 592 aa26.1■■□□□ 1.77
RTN4-207ENST00000402434 MEGF6O75095 1541 aa26.09■■□□□ 1.77
RTN4-207ENST00000402434 RGPD1P0DJD0 1748 aa26.08■■□□□ 1.77
RTN4-207ENST00000402434 MTHFSP49914 203 aa26.08■■□□□ 1.77
RTN4-207ENST00000402434 RAPGEF4Q8WZA2 1011 aa26.08■■□□□ 1.77
RTN4-207ENST00000402434 DEFB132Q7Z7B7 95 aa26.07■■□□□ 1.76
RTN4-207ENST00000402434 ZCRB1Q8TBF4 217 aaKnown RBP26.05■■□□□ 1.76
RTN4-207ENST00000402434 TATP17735 454 aaPredicted RBP26.04■■□□□ 1.76
RTN4-207ENST00000402434 BAG6P46379 1132 aa26.04■■□□□ 1.76
RTN4-207ENST00000402434 TNS1Q9HBL0 1735 aaKnown RBP26.04■■□□□ 1.76
RTN4-207ENST00000402434 CNGB1Q14028 1251 aaPredicted RBP26.04■■□□□ 1.76
RTN4-207ENST00000402434 IGSF1Q8N6C5 1336 aa26.04■■□□□ 1.76
RTN4-207ENST00000402434 SBF2Q86WG5 1849 aa26.03■■□□□ 1.76
RTN4-207ENST00000402434 DDX54Q8TDD1 881 aaKnown RBP26.02■■□□□ 1.76
RTN4-207ENST00000402434 IL13P35225 146 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms