RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 BCL9O00512 1426 aa22.23■■□□□ 1.15
CHMP3-202ENST00000393773 LTN1O94822 1766 aa22.23■■□□□ 1.15
CHMP3-202ENST00000393773 WDR17Q8IZU2 1322 aa22.23■■□□□ 1.15
CHMP3-202ENST00000393773 MYOM1P52179 1685 aa22.23■■□□□ 1.15
CHMP3-202ENST00000393773 ZBTB7CA1YPR0 619 aa22.22■■□□□ 1.15
CHMP3-202ENST00000393773 NHSQ6T4R5 1651 aa22.22■■□□□ 1.15
CHMP3-202ENST00000393773 DDB1Q16531 1140 aa22.2■■□□□ 1.14
CHMP3-202ENST00000393773 AXIN2Q9Y2T1 843 aa22.2■■□□□ 1.14
CHMP3-202ENST00000393773 NINLQ9Y2I6 1382 aa22.2■■□□□ 1.14
CHMP3-202ENST00000393773 TOM1L2Q6ZVM7 507 aa22.19■■□□□ 1.14
CHMP3-202ENST00000393773 ANO8Q9HCE9 1232 aaPredicted RBP22.19■■□□□ 1.14
CHMP3-202ENST00000393773 EVC2Q86UK5 1308 aa22.19■■□□□ 1.14
CHMP3-202ENST00000393773 PLSCR1O15162 318 aa22.18■■□□□ 1.14
CHMP3-202ENST00000393773 PTF1AQ7RTS3 328 aa22.18■■□□□ 1.14
CHMP3-202ENST00000393773 L3MBTL2Q969R5 705 aa22.18■■□□□ 1.14
CHMP3-202ENST00000393773 SPON1Q9HCB6 807 aa22.18■■□□□ 1.14
CHMP3-202ENST00000393773 TNS2Q63HR2 1409 aa22.17■■□□□ 1.14
CHMP3-202ENST00000393773 TTC21BQ7Z4L5 1316 aa22.17■■□□□ 1.14
CHMP3-202ENST00000393773 ARHGEF25Q86VW2 580 aa22.17■■□□□ 1.14
CHMP3-202ENST00000393773 PAPPAQ13219 1627 aa22.17■■□□□ 1.14
CHMP3-202ENST00000393773 KCNQ2O43526 872 aa22.16■■□□□ 1.14
CHMP3-202ENST00000393773 MARCH10Q8NA82 808 aaPredicted RBP22.16■■□□□ 1.14
CHMP3-202ENST00000393773 BCL11BQ9C0K0 894 aaPredicted RBP22.15■■□□□ 1.14
CHMP3-202ENST00000393773 ROCK2O75116 1388 aaKnown RBP22.14■■□□□ 1.14
CHMP3-202ENST00000393773 TTC21AQ8NDW8 1320 aa22.14■■□□□ 1.14
CHMP3-202ENST00000393773 CDCA7Q9BWT1 371 aaPredicted RBP22.14■■□□□ 1.13
CHMP3-202ENST00000393773 BTAF1O14981 1849 aa22.13■■□□□ 1.13
CHMP3-202ENST00000393773 PPP1R1BQ9UD71 204 aaPredicted RBP22.13■■□□□ 1.13
CHMP3-202ENST00000393773 CD163L1Q9NR16 1453 aa22.12■■□□□ 1.13
CHMP3-202ENST00000393773 KCNH5Q8NCM2 988 aa22.12■■□□□ 1.13
CHMP3-202ENST00000393773 CARD10Q9BWT7 1032 aa22.12■■□□□ 1.13
CHMP3-202ENST00000393773 SBNO2Q9Y2G9 1366 aa22.12■■□□□ 1.13
CHMP3-202ENST00000393773 PROM2Q8N271 834 aa22.11■■□□□ 1.13
CHMP3-202ENST00000393773 KTN1Q86UP2 1357 aaKnown RBP22.11■■□□□ 1.13
CHMP3-202ENST00000393773 CCDC7Q96M83 1385 aa22.11■■□□□ 1.13
CHMP3-202ENST00000393773 YY1P25490 414 aa22.1■■□□□ 1.13
CHMP3-202ENST00000393773 ZNF692Q9BU19 519 aaPredicted RBP22.1■■□□□ 1.13
CHMP3-202ENST00000393773 SOX12O15370 315 aa22.09■■□□□ 1.13
CHMP3-202ENST00000393773 PDGFDQ9GZP0 370 aaPredicted RBP22.09■■□□□ 1.13
CHMP3-202ENST00000393773 FAM208AQ9UK61 1670 aaKnown RBP22.09■■□□□ 1.13
CHMP3-202ENST00000393773 USP31Q70CQ4 1352 aa22.08■■□□□ 1.12
CHMP3-202ENST00000393773 SIN3AQ96ST3 1273 aa22.07■■□□□ 1.12
CHMP3-202ENST00000393773 UTRNP46939 3433 aa22.07■■□□□ 1.12
CHMP3-202ENST00000393773 QSER1Q2KHR3 1735 aa22.06■■□□□ 1.12
CHMP3-202ENST00000393773 CSB-PGBD3P0DP91 1061 aa22.06■■□□□ 1.12
CHMP3-202ENST00000393773 TUBGCP6Q96RT7 1819 aa22.04■■□□□ 1.12
CHMP3-202ENST00000393773 PTGER2P43116 358 aa22.04■■□□□ 1.12
CHMP3-202ENST00000393773 CHD4Q14839 1912 aa22.04■■□□□ 1.12
CHMP3-202ENST00000393773 ERBB3P21860 1342 aa22.04■■□□□ 1.12
CHMP3-202ENST00000393773 TXNRD1Q16881 649 aa22.03■■□□□ 1.12
CHMP3-202ENST00000393773 ZBTB7AO95365 584 aa22.02■■□□□ 1.12
CHMP3-202ENST00000393773 COL24A1Q17RW2 1714 aa22.02■■□□□ 1.12
CHMP3-202ENST00000393773 SHANK3Q9BYB0 1731 aa22.02■■□□□ 1.12
CHMP3-202ENST00000393773 EXOC5O00471 708 aa22■■□□□ 1.11
CHMP3-202ENST00000393773 STK32BQ9NY57 414 aa22■■□□□ 1.11
CHMP3-202ENST00000393773 KAT6BQ8WYB5 2073 aa22■■□□□ 1.11
CHMP3-202ENST00000393773 DOT1LQ8TEK3 1739 aa22■■□□□ 1.11
CHMP3-202ENST00000393773 EDC4Q6P2E9 1401 aaKnown RBP21.99■■□□□ 1.11
CHMP3-202ENST00000393773 SLC15A2Q16348 729 aa21.99■■□□□ 1.11
CHMP3-202ENST00000393773 RGPD2P0DJD1 1756 aa21.98■■□□□ 1.11
CHMP3-202ENST00000393773 NME9Q86XW9 330 aa21.98■■□□□ 1.11
CHMP3-202ENST00000393773 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.98■■□□□ 1.11
CHMP3-202ENST00000393773 DCAF8L1A6NGE4 600 aa21.96■■□□□ 1.11
CHMP3-202ENST00000393773 NEUROD1Q13562 356 aa21.96■■□□□ 1.11
CHMP3-202ENST00000393773 SGIP1Q9BQI5 828 aa21.96■■□□□ 1.11
CHMP3-202ENST00000393773 LY75O60449 1722 aa21.96■■□□□ 1.11
CHMP3-202ENST00000393773 A0A1W2PP64 1363 aa21.96■■□□□ 1.11
CHMP3-202ENST00000393773 ATF5Q9Y2D1 282 aaPredicted RBP21.95■■□□□ 1.1
CHMP3-202ENST00000393773 ACSBG1Q96GR2 724 aa21.94■■□□□ 1.1
CHMP3-202ENST00000393773 IL2RBP14784 551 aa21.93■■□□□ 1.1
CHMP3-202ENST00000393773 MTFR1LQ9H019 292 aa21.93■■□□□ 1.1
CHMP3-202ENST00000393773 NLRP2Q9NX02 1062 aa21.93■■□□□ 1.1
CHMP3-202ENST00000393773 ANKRD24Q8TF21 1146 aa21.92■■□□□ 1.1
CHMP3-202ENST00000393773 FHDC1Q9C0D6 1143 aaPredicted RBP21.92■■□□□ 1.1
CHMP3-202ENST00000393773 MAP3K5Q99683 1374 aa21.9■■□□□ 1.1
CHMP3-202ENST00000393773 ZNF827Q17R98 1081 aa21.89■■□□□ 1.09
CHMP3-202ENST00000393773 SYT17Q9BSW7 474 aa21.89■■□□□ 1.09
CHMP3-202ENST00000393773 CARD11Q9BXL7 1154 aa21.89■■□□□ 1.09
CHMP3-202ENST00000393773 SLC12A5Q9H2X9 1139 aa21.89■■□□□ 1.09
CHMP3-202ENST00000393773 HDGFL2Q7Z4V5 671 aaPredicted RBP21.88■■□□□ 1.09
CHMP3-202ENST00000393773 GOLGB1Q14789 3259 aaKnown RBP21.88■■□□□ 1.09
CHMP3-202ENST00000393773 TMC1Q8TDI8 760 aa21.87■■□□□ 1.09
CHMP3-202ENST00000393773 LRRC4BQ9NT99 713 aa21.86■■□□□ 1.09
CHMP3-202ENST00000393773 TERF2IPQ9NYB0 399 aa21.84■■□□□ 1.09
CHMP3-202ENST00000393773 KIF20BQ96Q89 1820 aa21.84■■□□□ 1.09
CHMP3-202ENST00000393773 MEGF6O75095 1541 aa21.84■■□□□ 1.09
CHMP3-202ENST00000393773 NSD2O96028 1365 aa21.84■■□□□ 1.09
CHMP3-202ENST00000393773 ZNF784Q8NCA9 323 aaPredicted RBP21.83■■□□□ 1.09
CHMP3-202ENST00000393773 IP6K1Q92551 441 aa21.83■■□□□ 1.09
CHMP3-202ENST00000393773 PUS7Q96PZ0 661 aaKnown RBP21.83■■□□□ 1.09
CHMP3-202ENST00000393773 AKT1S1Q96B36 256 aa21.82■■□□□ 1.08
CHMP3-202ENST00000393773 ARXQ96QS3 562 aa21.82■■□□□ 1.08
CHMP3-202ENST00000393773 C5P01031 1676 aa21.81■■□□□ 1.08
CHMP3-202ENST00000393773 TAF1LQ8IZX4 1826 aa21.8■■□□□ 1.08
CHMP3-202ENST00000393773 ANKRD36BQ8N2N9 1353 aa21.8■■□□□ 1.08
CHMP3-202ENST00000393773 TONSLQ96HA7 1378 aa21.79■■□□□ 1.08
CHMP3-202ENST00000393773 TESK2Q96S53 571 aa21.79■■□□□ 1.08
CHMP3-202ENST00000393773 MAP3K19Q56UN5 1328 aa21.79■■□□□ 1.08
CHMP3-202ENST00000393773 PNPLA7Q6ZV29 1317 aa21.79■■□□□ 1.08
CHMP3-202ENST00000393773 RTL1A6NKG5 1358 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms