RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 SSH1Q8WYL5 1049 aa11.62□□□□□ -0.55
TDP1-202ENST00000393452 TTC21AQ8NDW8 1320 aa11.62□□□□□ -0.55
TDP1-202ENST00000393452 SMC4Q9NTJ3 1288 aa11.62□□□□□ -0.55
TDP1-202ENST00000393452 NUTM2FA1L443 756 aa11.61□□□□□ -0.55
TDP1-202ENST00000393452 CALD1Q05682 793 aaKnown RBP11.61□□□□□ -0.55
TDP1-202ENST00000393452 MVPQ14764 893 aaKnown RBP11.61□□□□□ -0.55
TDP1-202ENST00000393452 ZNF428Q96B54 188 aa11.61□□□□□ -0.55
TDP1-202ENST00000393452 NOP58Q9Y2X3 529 aaKnown RBP11.61□□□□□ -0.55
TDP1-202ENST00000393452 RGPD1P0DJD0 1748 aa11.61□□□□□ -0.55
TDP1-202ENST00000393452 PEAK1Q9H792 1746 aa11.61□□□□□ -0.55
TDP1-202ENST00000393452 ALDH1L2Q3SY69 923 aa11.61□□□□□ -0.55
TDP1-202ENST00000393452 DZIP1LQ8IYY4 767 aaKnown RBP11.61□□□□□ -0.55
TDP1-202ENST00000393452 PMFBP1Q8TBY8 1022 aa11.61□□□□□ -0.55
TDP1-202ENST00000393452 ZNF142P52746 1687 aaPredicted RBP11.61□□□□□ -0.55
TDP1-202ENST00000393452 ANKARQ7Z5J8 1434 aa11.6□□□□□ -0.55
TDP1-202ENST00000393452 ZNF853P0CG23 659 aa11.6□□□□□ -0.55
TDP1-202ENST00000393452 TRIM27P14373 513 aa11.6□□□□□ -0.55
TDP1-202ENST00000393452 BRPF1P55201 1214 aaPredicted RBP11.6□□□□□ -0.55
TDP1-202ENST00000393452 PCDHB15Q9Y5E8 787 aa11.6□□□□□ -0.55
TDP1-202ENST00000393452 SETD1BQ9UPS6 1966 aaKnown RBP11.6□□□□□ -0.55
TDP1-202ENST00000393452 IFT57Q9NWB7 429 aa11.6□□□□□ -0.55
TDP1-202ENST00000393452 KIF16BQ96L93 1317 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 LMOD3Q0VAK6 560 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 EIF4A2Q14240 407 aaKnown RBP11.59□□□□□ -0.55
TDP1-202ENST00000393452 C8orf34Q49A92 452 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 ATF7IPQ6VMQ6 1270 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 ERICH6Q7L0X2 663 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 FMN2Q9NZ56 1722 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 KCNA6P17658 529 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 GNAI1P63096 354 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 FAM161AQ3B820 660 aa11.59□□□□□ -0.55
TDP1-202ENST00000393452 FTSJ3Q8IY81 847 aaKnown RBP11.59□□□□□ -0.55
TDP1-202ENST00000393452 CHD2O14647 1828 aaKnown RBP11.58□□□□□ -0.56
TDP1-202ENST00000393452 ADAMTSL3P82987 1691 aa11.58□□□□□ -0.56
TDP1-202ENST00000393452 VIRMAQ69YN4 1812 aaKnown RBP11.58□□□□□ -0.56
TDP1-202ENST00000393452 RGS3P49796 1198 aa11.57□□□□□ -0.56
TDP1-202ENST00000393452 PIK3C2AO00443 1686 aa11.57□□□□□ -0.56
TDP1-202ENST00000393452 PAK3O75914 559 aaPredicted RBP11.57□□□□□ -0.56
TDP1-202ENST00000393452 THUMPD2Q9BTF0 503 aaKnown RBP11.57□□□□□ -0.56
TDP1-202ENST00000393452 NOB1Q9ULX3 412 aaKnown RBP11.57□□□□□ -0.56
TDP1-202ENST00000393452 USP54Q70EL1 1684 aa11.57□□□□□ -0.56
TDP1-202ENST00000393452 IPO8O15397 1037 aaKnown RBP11.56□□□□□ -0.56
TDP1-202ENST00000393452 VAMP4O75379 141 aa11.56□□□□□ -0.56
TDP1-202ENST00000393452 CFAP44Q96MT7 982 aa11.56□□□□□ -0.56
TDP1-202ENST00000393452 DDX19BQ9UMR2 479 aa11.56□□□□□ -0.56
TDP1-202ENST00000393452 HSP90AB2PQ58FF8 381 aa11.56□□□□□ -0.56
TDP1-202ENST00000393452 MBIPQ9NS73 344 aa11.56□□□□□ -0.56
TDP1-202ENST00000393452 SULT6B1Q6IMI4 303 aa11.55□□□□□ -0.56
TDP1-202ENST00000393452 AEBP1Q8IUX7 1158 aa11.55□□□□□ -0.56
TDP1-202ENST00000393452 NGDNQ8NEJ9 315 aaKnown RBP11.55□□□□□ -0.56
TDP1-202ENST00000393452 RWDD1Q9H446 243 aaPredicted RBP11.55□□□□□ -0.56
TDP1-202ENST00000393452 ZBTB47Q9UFB7 747 aaPredicted RBP11.55□□□□□ -0.56
TDP1-202ENST00000393452 MAP3K19Q56UN5 1328 aa11.55□□□□□ -0.56
TDP1-202ENST00000393452 MARF1Q9Y4F3 1742 aaKnown RBP11.55□□□□□ -0.56
TDP1-202ENST00000393452 SBNO1A3KN83 1393 aa11.55□□□□□ -0.56
TDP1-202ENST00000393452 NPM2Q86SE8 214 aaKnown RBP11.55□□□□□ -0.56
TDP1-202ENST00000393452 ANKLE2Q86XL3 938 aa11.55□□□□□ -0.56
TDP1-202ENST00000393452 FLT4P35916 1363 aa11.54□□□□□ -0.56
TDP1-202ENST00000393452 LAS1LQ9Y4W2 734 aaKnown RBP11.54□□□□□ -0.56
TDP1-202ENST00000393452 ARHGEF10O15013 1369 aa11.54□□□□□ -0.56
TDP1-202ENST00000393452 HDAC1Q13547 482 aaPredicted RBP11.54□□□□□ -0.56
TDP1-202ENST00000393452 ARHGAP45Q92619 1136 aa11.54□□□□□ -0.56
TDP1-202ENST00000393452 FAM83GA6ND36 823 aa11.53□□□□□ -0.56
TDP1-202ENST00000393452 TMEM57Q8N5G2 664 aa11.53□□□□□ -0.56
TDP1-202ENST00000393452 TSPYL6Q8N831 410 aa11.53□□□□□ -0.56
TDP1-202ENST00000393452 ZBTB40Q9NUA8 1239 aa11.53□□□□□ -0.56
TDP1-202ENST00000393452 KDRP35968 1356 aa11.53□□□□□ -0.56
TDP1-202ENST00000393452 ITPRIPQ8IWB1 547 aa11.53□□□□□ -0.56
TDP1-202ENST00000393452 MRPL50Q8N5N7 158 aaKnown RBP11.53□□□□□ -0.56
TDP1-202ENST00000393452 KIF24Q5T7B8 1368 aa11.52□□□□□ -0.56
TDP1-202ENST00000393452 TWISTNBQ3B726 338 aaPredicted RBP11.52□□□□□ -0.57
TDP1-202ENST00000393452 PDZRN3Q9UPQ7 1066 aa11.52□□□□□ -0.57
TDP1-202ENST00000393452 DCTN1Q14203 1278 aa11.51□□□□□ -0.57
TDP1-202ENST00000393452 C8orf58Q8NAV2 365 aa11.5□□□□□ -0.57
TDP1-202ENST00000393452 IGSF1Q8N6C5 1336 aa11.5□□□□□ -0.57
TDP1-202ENST00000393452 CHL1O00533 1208 aa11.5□□□□□ -0.57
TDP1-202ENST00000393452 NLRP6P59044 892 aa11.5□□□□□ -0.57
TDP1-202ENST00000393452 DDRGK1Q96HY6 314 aa11.5□□□□□ -0.57
TDP1-202ENST00000393452 ADGRL3Q9HAR2 1447 aa11.49□□□□□ -0.57
TDP1-202ENST00000393452 SOX12O15370 315 aa11.49□□□□□ -0.57
TDP1-202ENST00000393452 SMC5Q8IY18 1101 aa11.49□□□□□ -0.57
TDP1-202ENST00000393452 KIAA0232Q92628 1395 aa11.49□□□□□ -0.57
TDP1-202ENST00000393452 ABCC4O15439 1325 aa11.49□□□□□ -0.57
TDP1-202ENST00000393452 CRB1P82279 1406 aa11.48□□□□□ -0.57
TDP1-202ENST00000393452 AMPHP49418 695 aa11.48□□□□□ -0.57
TDP1-202ENST00000393452 ELL2O00472 640 aaPredicted RBP11.48□□□□□ -0.57
TDP1-202ENST00000393452 ZBTB7BO15156 539 aaPredicted RBP11.48□□□□□ -0.57
TDP1-202ENST00000393452 EYA1Q99502 592 aa11.48□□□□□ -0.57
TDP1-202ENST00000393452 PHF8Q9UPP1 1060 aa11.48□□□□□ -0.57
TDP1-202ENST00000393452 NWD1Q149M9 1564 aa11.48□□□□□ -0.57
TDP1-202ENST00000393452 FBXO41Q8TF61 875 aa11.47□□□□□ -0.57
TDP1-202ENST00000393452 CHMP4BQ9H444 224 aaKnown RBP11.47□□□□□ -0.57
TDP1-202ENST00000393452 NPHP4O75161 1426 aaPredicted RBP11.47□□□□□ -0.57
TDP1-202ENST00000393452 USP19O94966 1318 aa11.47□□□□□ -0.57
TDP1-202ENST00000393452 HOXC9P31274 260 aa11.47□□□□□ -0.57
TDP1-202ENST00000393452 HAP1P54257 671 aaPredicted RBP11.47□□□□□ -0.57
TDP1-202ENST00000393452 MCM10Q7L590 875 aa11.47□□□□□ -0.57
TDP1-202ENST00000393452 ABTB2Q8N961 1025 aa11.47□□□□□ -0.57
TDP1-202ENST00000393452 MTHFSDQ2M296 383 aaKnown RBP11.46□□□□□ -0.57
TDP1-202ENST00000393452 RTL1A6NKG5 1358 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms