RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 CAVIN1Q6NZI2 390 aaKnown RBP18.14■□□□□ 0.49
VPS9D1-201ENST00000389386 WDR63Q8IWG1 891 aa18.14■□□□□ 0.49
VPS9D1-201ENST00000389386 VGFO15240 615 aaPredicted RBP18.13■□□□□ 0.49
VPS9D1-201ENST00000389386 DZIP1LQ8IYY4 767 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-201ENST00000389386 CABP2Q9NPB3 220 aa18.13■□□□□ 0.49
VPS9D1-201ENST00000389386 ZKSCAN2Q63HK3 967 aa18.13■□□□□ 0.49
VPS9D1-201ENST00000389386 RRP7AQ9Y3A4 280 aaKnown RBP18.13■□□□□ 0.49
VPS9D1-201ENST00000389386 PRIM1P49642 420 aaKnown RBP18.12■□□□□ 0.49
VPS9D1-201ENST00000389386 ADGRB1O14514 1584 aa18.12■□□□□ 0.49
VPS9D1-201ENST00000389386 NCLP19338 710 aaKnown RBP18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 FTSJ3Q8IY81 847 aaKnown RBP18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 CCDC39Q9UFE4 941 aa18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 NSD3Q9BZ95 1437 aa18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 RPGRIP1LQ68CZ1 1315 aa18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 GTPBP4Q9BZE4 634 aaKnown RBP18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 LMBRD1Q9NUN5 540 aa18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 POLR3AO14802 1390 aaPredicted RBP18.11■□□□□ 0.49
VPS9D1-201ENST00000389386 TMEM131LA2VDJ0 1609 aa18.1■□□□□ 0.49
VPS9D1-201ENST00000389386 TAF7LQ5H9L4 462 aa18.1■□□□□ 0.49
VPS9D1-201ENST00000389386 MCTP1Q6DN14 999 aa18.1■□□□□ 0.49
VPS9D1-201ENST00000389386 TCP11L2Q8N4U5 519 aa18.1■□□□□ 0.49
VPS9D1-201ENST00000389386 RUNDC1Q96C34 613 aa18.1■□□□□ 0.49
VPS9D1-201ENST00000389386 MYRIPQ8NFW9 859 aa18.09■□□□□ 0.49
VPS9D1-201ENST00000389386 RBM42Q9BTD8 480 aaKnown RBP18.09■□□□□ 0.49
VPS9D1-201ENST00000389386 NAP1L2Q9ULW6 460 aaPredicted RBP18.09■□□□□ 0.49
VPS9D1-201ENST00000389386 QRICH2Q9H0J4 1663 aa18.09■□□□□ 0.49
VPS9D1-201ENST00000389386 MORC1Q86VD1 984 aa18.09■□□□□ 0.49
VPS9D1-201ENST00000389386 NEXMIFQ5QGS0 1516 aa18.09■□□□□ 0.49
VPS9D1-201ENST00000389386 KIF20AO95235 890 aa18.08■□□□□ 0.49
VPS9D1-201ENST00000389386 PPP4R3BQ5MIZ7 849 aa18.08■□□□□ 0.49
VPS9D1-201ENST00000389386 SPATA31D1Q6ZQQ2 1576 aa18.08■□□□□ 0.49
VPS9D1-201ENST00000389386 GTF2E1P29083 439 aaPredicted RBP18.08■□□□□ 0.48
VPS9D1-201ENST00000389386 TNRQ92752 1358 aa18.07■□□□□ 0.48
VPS9D1-201ENST00000389386 NUCB1Q02818 461 aa18.07■□□□□ 0.48
VPS9D1-201ENST00000389386 MINK1Q8N4C8 1332 aaPredicted RBP18.07■□□□□ 0.48
VPS9D1-201ENST00000389386 SETBP1Q9Y6X0 1596 aa18.07■□□□□ 0.48
VPS9D1-201ENST00000389386 IQSEC2Q5JU85 1478 aa18.07■□□□□ 0.48
VPS9D1-201ENST00000389386 ZNF710Q8N1W2 664 aa18.07■□□□□ 0.48
VPS9D1-201ENST00000389386 SBNO2Q9Y2G9 1366 aa18.06■□□□□ 0.48
VPS9D1-201ENST00000389386 BMP2KLQ5H9B9 411 aa18.06■□□□□ 0.48
VPS9D1-201ENST00000389386 DDX19BQ9UMR2 479 aa18.06■□□□□ 0.48
VPS9D1-201ENST00000389386 AK9Q5TCS8 1911 aa18.05■□□□□ 0.48
VPS9D1-201ENST00000389386 CYP2E1P05181 493 aaPredicted RBP18.05■□□□□ 0.48
VPS9D1-201ENST00000389386 MYO3AQ8NEV4 1616 aa18.05■□□□□ 0.48
VPS9D1-201ENST00000389386 SRPK2P78362 688 aaKnown RBP18.05■□□□□ 0.48
VPS9D1-201ENST00000389386 CCDC27Q2M243 656 aa18.05■□□□□ 0.48
VPS9D1-201ENST00000389386 A2ML1A8K2U0 1454 aa18.05■□□□□ 0.48
VPS9D1-201ENST00000389386 NUCB2P80303 420 aa18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 CBX1P83916 185 aa18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 JARID2Q92833 1246 aaPredicted RBP18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 LNPKQ9C0E8 428 aa18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 LETM1O95202 739 aaPredicted RBP18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 TRIM27P14373 513 aa18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 CHMP4BQ9H444 224 aaKnown RBP18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 KIF16BQ96L93 1317 aa18.04■□□□□ 0.48
VPS9D1-201ENST00000389386 FER1L4A9Z1Z3 1794 aa18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 GPT2Q8TD30 523 aa18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 RBM27Q9P2N5 1060 aaKnown RBP18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 EVC2Q86UK5 1308 aa18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 LRSAM1Q6UWE0 723 aa18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 ITPRIPQ8IWB1 547 aa18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 PRAM1Q96QH2 718 aa18.03■□□□□ 0.48
VPS9D1-201ENST00000389386 KIAA2012Q0VF49 1180 aa18.02■□□□□ 0.48
VPS9D1-201ENST00000389386 CHD1LQ86WJ1 897 aa18.02■□□□□ 0.48
VPS9D1-201ENST00000389386 SHPRHQ149N8 1683 aa18.02■□□□□ 0.48
VPS9D1-201ENST00000389386 GTF2F1P35269 517 aaKnown RBP eCLIP18.02■□□□□ 0.482e-6■■■□□ 18.3
VPS9D1-201ENST00000389386 TSC1Q92574 1164 aa18.02■□□□□ 0.48
VPS9D1-201ENST00000389386 ZBTB40Q9NUA8 1239 aa18.02■□□□□ 0.48
VPS9D1-201ENST00000389386 ATP2B3Q16720 1220 aa18.01■□□□□ 0.47
VPS9D1-201ENST00000389386 PRIMPOLQ96LW4 560 aa18.01■□□□□ 0.47
VPS9D1-201ENST00000389386 RIMS2Q9UQ26 1411 aa18.01■□□□□ 0.47
VPS9D1-201ENST00000389386 MTHFSP49914 203 aa18.01■□□□□ 0.47
VPS9D1-201ENST00000389386 TBC1D9Q6ZT07 1266 aa18.01■□□□□ 0.47
VPS9D1-201ENST00000389386 PRPF40AO75400 957 aaKnown RBP18■□□□□ 0.47
VPS9D1-201ENST00000389386 C3P01024 1663 aa18■□□□□ 0.47
VPS9D1-201ENST00000389386 TULP4Q9NRJ4 1543 aa18■□□□□ 0.47
VPS9D1-201ENST00000389386 CT47B1P0C2W7 299 aaPredicted RBP18■□□□□ 0.47
VPS9D1-201ENST00000389386 SMC4Q9NTJ3 1288 aa18■□□□□ 0.47
VPS9D1-201ENST00000389386 HMGN5P82970 282 aaKnown RBP17.99■□□□□ 0.47
VPS9D1-201ENST00000389386 PKP1Q13835 747 aa17.99■□□□□ 0.47
VPS9D1-201ENST00000389386 ATF7IPQ6VMQ6 1270 aa17.99■□□□□ 0.47
VPS9D1-201ENST00000389386 TMEM63CQ9P1W3 806 aa17.99■□□□□ 0.47
VPS9D1-201ENST00000389386 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS9D1-201ENST00000389386 ARHGEF28Q8N1W1 1705 aaKnown RBP17.99■□□□□ 0.47
VPS9D1-201ENST00000389386 SYCE3A1L190 88 aa17.98■□□□□ 0.47
VPS9D1-201ENST00000389386 GGNBP2Q9H3C7 697 aa17.98■□□□□ 0.47
VPS9D1-201ENST00000389386 NCBP3Q53F19 620 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-201ENST00000389386 DNTTIP2Q5QJE6 756 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-201ENST00000389386 WAPLQ7Z5K2 1190 aa17.97■□□□□ 0.47
VPS9D1-201ENST00000389386 TMEM57Q8N5G2 664 aa17.97■□□□□ 0.47
VPS9D1-201ENST00000389386 SSH1Q8WYL5 1049 aa17.97■□□□□ 0.47
VPS9D1-201ENST00000389386 LTKP29376 864 aa17.96■□□□□ 0.47
VPS9D1-201ENST00000389386 PTMAP06454 111 aaKnown RBP17.96■□□□□ 0.47
VPS9D1-201ENST00000389386 RIMS1Q86UR5 1692 aaKnown RBP17.95■□□□□ 0.46
VPS9D1-201ENST00000389386 TMEM51Q9NW97 253 aa17.95■□□□□ 0.46
VPS9D1-201ENST00000389386 RABEP1Q15276 862 aa17.95■□□□□ 0.46
VPS9D1-201ENST00000389386 RNF214Q8ND24 703 aa17.94■□□□□ 0.46
VPS9D1-201ENST00000389386 TSR2Q969E8 191 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-201ENST00000389386 NOB1Q9ULX3 412 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-201ENST00000389386 CWC22Q9HCG8 908 aaKnown RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms