RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PNNQ9H307 717 aaKnown RBP35.4■■■■□ 3.26
MSX1-201ENST00000382723 NEUROD2Q15784 382 aa35.4■■■■□ 3.26
MSX1-201ENST00000382723 RTL1A6NKG5 1358 aa35.39■■■■□ 3.26
MSX1-201ENST00000382723 MAPK8IP3Q9UPT6 1336 aa35.39■■■■□ 3.26
MSX1-201ENST00000382723 PRKAR2BP31323 418 aa35.38■■■■□ 3.25
MSX1-201ENST00000382723 LTN1O94822 1766 aa35.38■■■■□ 3.25
MSX1-201ENST00000382723 IQSEC2Q5JU85 1478 aa35.38■■■■□ 3.25
MSX1-201ENST00000382723 ARHGEF25Q86VW2 580 aa35.38■■■■□ 3.25
MSX1-201ENST00000382723 IP6K1Q92551 441 aa35.38■■■■□ 3.25
MSX1-201ENST00000382723 NHSL1Q5SYE7 1610 aa35.36■■■■□ 3.25
MSX1-201ENST00000382723 ZC3H6P61129 1189 aaKnown RBP35.36■■■■□ 3.25
MSX1-201ENST00000382723 LTV1Q96GA3 475 aaPredicted RBP35.36■■■■□ 3.25
MSX1-201ENST00000382723 ROBO1Q9Y6N7 1651 aa35.36■■■■□ 3.25
MSX1-201ENST00000382723 PDE3BQ13370 1112 aa35.34■■■■□ 3.25
MSX1-201ENST00000382723 SULT6B1Q6IMI4 303 aa35.34■■■■□ 3.25
MSX1-201ENST00000382723 CDCA7LQ96GN5 454 aa35.34■■■■□ 3.25
MSX1-201ENST00000382723 AEBP1Q8IUX7 1158 aa35.33■■■■□ 3.25
MSX1-201ENST00000382723 NGEFQ8N5V2 710 aa35.33■■■■□ 3.25
MSX1-201ENST00000382723 NEFMP07197 916 aa35.32■■■■□ 3.24
MSX1-201ENST00000382723 ZNF521Q96K83 1311 aa35.32■■■■□ 3.24
MSX1-201ENST00000382723 TOM1O60784 492 aa35.3■■■■□ 3.24
MSX1-201ENST00000382723 PHRF1Q9P1Y6 1649 aaKnown RBP35.29■■■■□ 3.24
MSX1-201ENST00000382723 EYA1Q99502 592 aa35.29■■■■□ 3.24
MSX1-201ENST00000382723 PHACTR3Q96KR7 559 aa35.28■■■■□ 3.24
MSX1-201ENST00000382723 TMPOP42166 694 aaKnown RBP35.28■■■■□ 3.24
MSX1-201ENST00000382723 PIP4K2BP78356 416 aa35.28■■■■□ 3.24
MSX1-201ENST00000382723 WWC1Q8IX03 1113 aa35.27■■■■□ 3.24
MSX1-201ENST00000382723 RGPD1P0DJD0 1748 aa35.27■■■■□ 3.24
MSX1-201ENST00000382723 GOLGA2Q08379 1002 aa35.25■■■■□ 3.23
MSX1-201ENST00000382723 IGSF1Q8N6C5 1336 aa35.25■■■■□ 3.23
MSX1-201ENST00000382723 HAP1P54257 671 aaPredicted RBP35.24■■■■□ 3.23
MSX1-201ENST00000382723 AXIN2Q9Y2T1 843 aa35.24■■■■□ 3.23
MSX1-201ENST00000382723 UBAP1LF5GYI3 381 aa35.23■■■■□ 3.23
MSX1-201ENST00000382723 CRYBG1Q9Y4K1 1723 aa35.23■■■■□ 3.23
MSX1-201ENST00000382723 RIPK4P57078 832 aa35.22■■■■□ 3.23
MSX1-201ENST00000382723 AHDC1Q5TGY3 1603 aaPredicted RBP35.21■■■■□ 3.23
MSX1-201ENST00000382723 CCDC27Q2M243 656 aa35.21■■■■□ 3.23
MSX1-201ENST00000382723 LRRC59Q96AG4 307 aaKnown RBP35.21■■■■□ 3.23
MSX1-201ENST00000382723 PHF23Q9BUL5 403 aaPredicted RBP35.2■■■■□ 3.23
MSX1-201ENST00000382723 KIAA0232Q92628 1395 aa35.2■■■■□ 3.23
MSX1-201ENST00000382723 CHRNA2Q15822 529 aa35.2■■■■□ 3.22
MSX1-201ENST00000382723 NCBP3Q53F19 620 aaKnown RBP35.19■■■■□ 3.22
MSX1-201ENST00000382723 ANKRD24Q8TF21 1146 aa35.19■■■■□ 3.22
MSX1-201ENST00000382723 NFE2L2Q16236 605 aa35.18■■■■□ 3.22
MSX1-201ENST00000382723 USHBP1Q8N6Y0 703 aa35.18■■■■□ 3.22
MSX1-201ENST00000382723 KDRP35968 1356 aa35.17■■■■□ 3.22
MSX1-201ENST00000382723 SPINK5Q9NQ38 1064 aaPredicted RBP35.16■■■■□ 3.22
MSX1-201ENST00000382723 TRIM35Q9UPQ4 493 aa35.16■■■■□ 3.22
MSX1-201ENST00000382723 GTF3C3Q9Y5Q9 886 aa35.16■■■■□ 3.22
MSX1-201ENST00000382723 NBPF6Q5VWK0 638 aa35.16■■■■□ 3.22
MSX1-201ENST00000382723 NBPF4Q96M43 638 aa35.16■■■■□ 3.22
MSX1-201ENST00000382723 CPDO75976 1380 aa35.16■■■■□ 3.22
MSX1-201ENST00000382723 SLFN5Q08AF3 891 aa35.15■■■■□ 3.22
MSX1-201ENST00000382723 CERKQ8TCT0 537 aa35.13■■■■□ 3.21
MSX1-201ENST00000382723 SUPT16HQ9Y5B9 1047 aaKnown RBP35.13■■■■□ 3.21
MSX1-201ENST00000382723 WDR63Q8IWG1 891 aa35.12■■■■□ 3.21
MSX1-201ENST00000382723 PRDM11Q9NQV5 511 aa35.12■■■■□ 3.21
MSX1-201ENST00000382723 E9PSI1 815 aa35.11■■■■□ 3.21
MSX1-201ENST00000382723 DUSP27Q5VZP5 1158 aa35.11■■■■□ 3.21
MSX1-201ENST00000382723 ERBB3P21860 1342 aa35.1■■■■□ 3.21
MSX1-201ENST00000382723 PHLPP1O60346 1717 aa35.08■■■■□ 3.21
MSX1-201ENST00000382723 ABCA3Q99758 1704 aa35.08■■■■□ 3.21
MSX1-201ENST00000382723 COL18A1P39060 1754 aa35.07■■■■□ 3.2
MSX1-201ENST00000382723 RGPD5Q99666 1765 aa35.07■■■■□ 3.2
MSX1-201ENST00000382723 TRMT2AQ8IZ69 625 aaKnown RBP35.06■■■■□ 3.2
MSX1-201ENST00000382723 CSB-PGBD3P0DP91 1061 aa35.04■■■■□ 3.2
MSX1-201ENST00000382723 ABCC6O95255 1503 aa35.04■■■■□ 3.2
MSX1-201ENST00000382723 COL16A1Q07092 1604 aaPredicted RBP35.03■■■■□ 3.2
MSX1-201ENST00000382723 MTHFSDQ2M296 383 aaKnown RBP35.03■■■■□ 3.2
MSX1-201ENST00000382723 RGPD2P0DJD1 1756 aa35.03■■■■□ 3.2
MSX1-201ENST00000382723 NLRP2Q9NX02 1062 aa35.02■■■■□ 3.2
MSX1-201ENST00000382723 LMOD3Q0VAK6 560 aa35.01■■■■□ 3.2
MSX1-201ENST00000382723 THUMPD2Q9BTF0 503 aaKnown RBP35■■■■□ 3.19
MSX1-201ENST00000382723 FAM83GA6ND36 823 aa34.99■■■■□ 3.19
MSX1-201ENST00000382723 RCAN3Q9UKA8 241 aa34.98■■■■□ 3.19
MSX1-201ENST00000382723 GAS2L2Q8NHY3 880 aa34.97■■■■□ 3.19
MSX1-201ENST00000382723 DCTN1Q14203 1278 aa34.96■■■■□ 3.19
MSX1-201ENST00000382723 MYH16Q9H6N6 1097 aa34.96■■■■□ 3.19
MSX1-201ENST00000382723 COL22A1Q8NFW1 1626 aaPredicted RBP34.96■■■■□ 3.19
MSX1-201ENST00000382723 NCAPD2Q15021 1401 aa34.96■■■■□ 3.19
MSX1-201ENST00000382723 CAMTA1Q9Y6Y1 1673 aa34.95■■■■□ 3.19
MSX1-201ENST00000382723 IL16Q14005 1332 aa34.95■■■■□ 3.19
MSX1-201ENST00000382723 DLG5Q8TDM6 1919 aa34.94■■■■□ 3.18
MSX1-201ENST00000382723 NEFLP07196 543 aa34.93■■■■□ 3.18
MSX1-201ENST00000382723 LMO7Q8WWI1 1683 aa34.92■■■■□ 3.18
MSX1-201ENST00000382723 CALD1Q05682 793 aaKnown RBP34.92■■■■□ 3.18
MSX1-201ENST00000382723 TSR2Q969E8 191 aaKnown RBP34.92■■■■□ 3.18
MSX1-201ENST00000382723 LAS1LQ9Y4W2 734 aaKnown RBP34.92■■■■□ 3.18
MSX1-201ENST00000382723 MCM10Q7L590 875 aa34.91■■■■□ 3.18
MSX1-201ENST00000382723 COL5A2P05997 1499 aaPredicted RBP34.9■■■■□ 3.18
MSX1-201ENST00000382723 STRN4Q9NRL3 753 aa34.89■■■■□ 3.18
MSX1-201ENST00000382723 FANCIQ9NVI1 1328 aa34.89■■■■□ 3.18
MSX1-201ENST00000382723 RTF1Q92541 710 aaKnown RBP34.89■■■■□ 3.18
MSX1-201ENST00000382723 WDR17Q8IZU2 1322 aa34.88■■■■□ 3.17
MSX1-201ENST00000382723 EVA1CP58658 441 aa34.87■■■■□ 3.17
MSX1-201ENST00000382723 FKBP8Q14318 412 aa34.87■■■■□ 3.17
MSX1-201ENST00000382723 TOM1L2Q6ZVM7 507 aa34.87■■■■□ 3.17
MSX1-201ENST00000382723 NUTM2BA6NNL0 878 aaPredicted RBP34.87■■■■□ 3.17
MSX1-201ENST00000382723 NUTM2EB1AL46 878 aaPredicted RBP34.87■■■■□ 3.17
MSX1-201ENST00000382723 IRX6P78412 446 aaPredicted RBP34.87■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms