RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CCDC116Q8IYX3 515 aa8.8□□□□□ -1
USP48-202ENST00000374730 ADAM32Q8TC27 787 aa8.8□□□□□ -1
USP48-202ENST00000374730 ITPKCQ96DU7 683 aa8.8□□□□□ -1
USP48-202ENST00000374730 EMILIN1Q9Y6C2 1016 aa8.8□□□□□ -1
USP48-202ENST00000374730 CCDC180Q9P1Z9 1646 aa8.8□□□□□ -1
USP48-202ENST00000374730 SNRPBP14678 240 aaKnown RBP8.79□□□□□ -1
USP48-202ENST00000374730 ZFAND3Q9H8U3 227 aa8.79□□□□□ -1
USP48-202ENST00000374730 APBB1O00213 710 aa8.78□□□□□ -1
USP48-202ENST00000374730 SCARF1Q14162 830 aa8.78□□□□□ -1
USP48-202ENST00000374730 KCTD15Q96SI1 283 aaPredicted RBP8.78□□□□□ -1
USP48-202ENST00000374730 NBPF20Q3BBV1 942 aa8.77□□□□□ -1.01
USP48-202ENST00000374730 MEIOBQ8N635 442 aa8.77□□□□□ -1.01
USP48-202ENST00000374730 ZFP42Q96MM3 310 aa8.77□□□□□ -1.01
USP48-202ENST00000374730 DHX9Q08211 1270 aaKnown RBP8.76□□□□□ -1.01
USP48-202ENST00000374730 INTS6LQ5JSJ4 861 aaKnown RBP8.75□□□□□ -1.01
USP48-202ENST00000374730 PPP1R26Q5T8A7 1209 aaPredicted RBP8.75□□□□□ -1.01
USP48-202ENST00000374730 MTMR14Q8NCE2 650 aa8.75□□□□□ -1.01
USP48-202ENST00000374730 PGPEP1Q9NXJ5 209 aa8.75□□□□□ -1.01
USP48-202ENST00000374730 ZBBXA8MT70 800 aa8.74□□□□□ -1.01
USP48-202ENST00000374730 TREML4Q6UXN2 200 aa8.74□□□□□ -1.01
USP48-202ENST00000374730 DZIP3Q86Y13 1208 aaKnown RBP8.74□□□□□ -1.01
USP48-202ENST00000374730 NDUFB9Q9Y6M9 179 aa8.74□□□□□ -1.01
USP48-202ENST00000374730 UPP2O95045 317 aa8.73□□□□□ -1.01
USP48-202ENST00000374730 LINC00528Q8N1L1 170 aa8.73□□□□□ -1.01
USP48-202ENST00000374730 PURBQ96QR8 312 aaKnown RBP8.73□□□□□ -1.01
USP48-202ENST00000374730 ESPNB1AK53 854 aa8.72□□□□□ -1.01
USP48-202ENST00000374730 GPR37L1O60883 481 aa8.72□□□□□ -1.01
USP48-202ENST00000374730 FBXO45P0C2W1 286 aa8.72□□□□□ -1.01
USP48-202ENST00000374730 LCE2AQ5TA79 106 aaPredicted RBP8.72□□□□□ -1.01
USP48-202ENST00000374730 SNRKQ9NRH2 765 aa8.72□□□□□ -1.01
USP48-202ENST00000374730 NFX1Q12986 1120 aaKnown RBP8.71□□□□□ -1.02
USP48-202ENST00000374730 Q6ZVU0 165 aa8.71□□□□□ -1.02
USP48-202ENST00000374730 SEPT12Q8IYM1 358 aa8.71□□□□□ -1.02
USP48-202ENST00000374730 ZNF592Q92610 1267 aa8.71□□□□□ -1.02
USP48-202ENST00000374730 TSEN34Q9BSV6 310 aaKnown RBP8.71□□□□□ -1.02
USP48-202ENST00000374730 TERTO14746 1132 aaKnown RBP8.7□□□□□ -1.02
USP48-202ENST00000374730 WFS1O76024 890 aa8.7□□□□□ -1.02
USP48-202ENST00000374730 NR1H3Q13133 447 aa8.7□□□□□ -1.02
USP48-202ENST00000374730 BMP2P12643 396 aa8.69□□□□□ -1.02
USP48-202ENST00000374730 MCCD1P59942 119 aaPredicted RBP8.69□□□□□ -1.02
USP48-202ENST00000374730 NPAS3Q8IXF0 933 aa8.69□□□□□ -1.02
USP48-202ENST00000374730 ZNF330Q9Y3S2 320 aaPredicted RBP8.69□□□□□ -1.02
USP48-202ENST00000374730 C6orf118Q5T5N4 469 aa8.68□□□□□ -1.02
USP48-202ENST00000374730 CCDC125Q86Z20 511 aa8.68□□□□□ -1.02
USP48-202ENST00000374730 TRIM52Q96A61 297 aa8.68□□□□□ -1.02
USP48-202ENST00000374730 NXF1Q9UBU9 619 aaKnown RBP8.68□□□□□ -1.02
USP48-202ENST00000374730 PCDHB9Q9Y5E1 797 aa8.68□□□□□ -1.02
USP48-202ENST00000374730 SOS2Q07890 1332 aaPredicted RBP8.66□□□□□ -1.02
USP48-202ENST00000374730 ERVH48-1M5A8F1 160 aa8.66□□□□□ -1.02
USP48-202ENST00000374730 CBLBQ13191 982 aa8.66□□□□□ -1.02
USP48-202ENST00000374730 PRM3Q9NNZ6 103 aa8.66□□□□□ -1.02
USP48-202ENST00000374730 ZNF784Q8NCA9 323 aaPredicted RBP8.65□□□□□ -1.02
USP48-202ENST00000374730 SPINT1O43278 529 aa8.64□□□□□ -1.03
USP48-202ENST00000374730 MAN1A2O60476 641 aa8.64□□□□□ -1.03
USP48-202ENST00000374730 RAB15P59190 212 aa8.64□□□□□ -1.03
USP48-202ENST00000374730 SLC16A10Q8TF71 515 aa8.64□□□□□ -1.03
USP48-202ENST00000374730 TMPRSS4Q9NRS4 437 aa8.64□□□□□ -1.03
USP48-202ENST00000374730 LILRA1O75019 489 aa8.63□□□□□ -1.03
USP48-202ENST00000374730 ADH1AP07327 375 aa8.63□□□□□ -1.03
USP48-202ENST00000374730 RNF20Q5VTR2 975 aa8.63□□□□□ -1.03
USP48-202ENST00000374730 TBC1D2BQ9UPU7 963 aa8.63□□□□□ -1.03
USP48-202ENST00000374730 TTLL8A6PVC2 850 aa8.62□□□□□ -1.03
USP48-202ENST00000374730 SOBPA7XYQ1 873 aa8.62□□□□□ -1.03
USP48-202ENST00000374730 H3BM21 787 aa8.62□□□□□ -1.03
USP48-202ENST00000374730 GIGYF1O75420 1035 aaPredicted RBP8.62□□□□□ -1.03
USP48-202ENST00000374730 WIPF1O43516 503 aa8.61□□□□□ -1.03
USP48-202ENST00000374730 MCM6Q14566 821 aa8.61□□□□□ -1.03
USP48-202ENST00000374730 DNMT3LQ9UJW3 386 aa8.61□□□□□ -1.03
USP48-202ENST00000374730 RELBQ01201 579 aa8.6□□□□□ -1.03
USP48-202ENST00000374730 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.6□□□□□ -1.032e-10■□□□□ 9.8
USP48-202ENST00000374730 LCE2CQ5TA81 110 aa8.6□□□□□ -1.03
USP48-202ENST00000374730 AGBL1Q96MI9 1066 aa8.6□□□□□ -1.03
USP48-202ENST00000374730 ADD1P35611 737 aaKnown RBP8.59□□□□□ -1.03
USP48-202ENST00000374730 IRF7Q92985 503 aa8.59□□□□□ -1.03
USP48-202ENST00000374730 PTGIRP43119 386 aa8.58□□□□□ -1.04
USP48-202ENST00000374730 ERVK-9P63128 1117 aa8.58□□□□□ -1.04
USP48-202ENST00000374730 IRF5Q13568 498 aa8.58□□□□□ -1.04
USP48-202ENST00000374730 CYLDQ9NQC7 956 aa8.58□□□□□ -1.04
USP48-202ENST00000374730 ZCCHC6Q5VYS8 1495 aaKnown RBP8.57□□□□□ -1.04
USP48-202ENST00000374730 EIF4G2P78344 907 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP48-202ENST00000374730 CC2D2BQ6DHV5 1058 aa8.57□□□□□ -1.04
USP48-202ENST00000374730 KDF1Q8NAX2 398 aaPredicted RBP8.57□□□□□ -1.04
USP48-202ENST00000374730 VSIG8P0DPA2 414 aa8.56□□□□□ -1.04
USP48-202ENST00000374730 CTSOP43234 321 aaPredicted RBP8.56□□□□□ -1.04
USP48-202ENST00000374730 INSM2Q96T92 566 aaPredicted RBP8.56□□□□□ -1.04
USP48-202ENST00000374730 GDPD2Q9HCC8 539 aa8.56□□□□□ -1.04
USP48-202ENST00000374730 VEGFBP49765 207 aa8.55□□□□□ -1.04
USP48-202ENST00000374730 WASHC4Q2M389 1173 aa8.55□□□□□ -1.04
USP48-202ENST00000374730 ZNF395Q9H8N7 513 aaPredicted RBP8.55□□□□□ -1.04
USP48-202ENST00000374730 POLMQ9NP87 494 aaPredicted RBP8.55□□□□□ -1.04
USP48-202ENST00000374730 CEP126Q9P2H0 1117 aa8.55□□□□□ -1.04
USP48-202ENST00000374730 PCDHB11Q9Y5F2 797 aa8.55□□□□□ -1.04
USP48-202ENST00000374730 FIGNL2A6NMB9 653 aa8.54□□□□□ -1.04
USP48-202ENST00000374730 ATP5J2-PTCD1G3V325 749 aa8.54□□□□□ -1.04
USP48-202ENST00000374730 PPFIA3O75145 1194 aa8.54□□□□□ -1.04
USP48-202ENST00000374730 RNF217Q8TC41 542 aa8.54□□□□□ -1.04
USP48-202ENST00000374730 ABL2P42684 1182 aa8.53□□□□□ -1.04
USP48-202ENST00000374730 INSM1Q01101 510 aaPredicted RBP8.53□□□□□ -1.04
USP48-202ENST00000374730 PTSQ03393 145 aa8.53□□□□□ -1.04
USP48-202ENST00000374730 FOXD4L5Q5VV16 416 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms