RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 SIRT1Q96EB6 747 aa11.78□□□□□ -0.52
CD44-205ENST00000352818 LRRC37A3O60309 1634 aa11.78□□□□□ -0.52
CD44-205ENST00000352818 LMO7Q8WWI1 1683 aa11.78□□□□□ -0.52
CD44-205ENST00000352818 ANKARQ7Z5J8 1434 aa11.77□□□□□ -0.52
CD44-205ENST00000352818 YTHDC2Q9H6S0 1430 aaKnown RBP11.77□□□□□ -0.52
CD44-205ENST00000352818 COL24A1Q17RW2 1714 aa11.77□□□□□ -0.53
CD44-205ENST00000352818 DIEXFQ68CQ4 756 aaKnown RBP11.76□□□□□ -0.53
CD44-205ENST00000352818 PPLO60437 1756 aa11.76□□□□□ -0.53
CD44-205ENST00000352818 GPRASP1Q5JY77 1395 aa11.76□□□□□ -0.53
CD44-205ENST00000352818 LRRC4BQ9NT99 713 aa11.75□□□□□ -0.53
CD44-205ENST00000352818 COL5A2P05997 1499 aaPredicted RBP11.75□□□□□ -0.53
CD44-205ENST00000352818 PAK3O75914 559 aaPredicted RBP11.74□□□□□ -0.53
CD44-205ENST00000352818 TOMM70O94826 608 aa11.74□□□□□ -0.53
CD44-205ENST00000352818 SAFB2Q14151 953 aaKnown RBP eCLIP11.74□□□□□ -0.53
CD44-205ENST00000352818 DDB1Q16531 1140 aa11.74□□□□□ -0.53
CD44-205ENST00000352818 NUTM2GQ5VZR2 741 aa11.74□□□□□ -0.53
CD44-205ENST00000352818 AKT1S1Q96B36 256 aa11.74□□□□□ -0.53
CD44-205ENST00000352818 WDR90Q96KV7 1748 aa11.74□□□□□ -0.53
CD44-205ENST00000352818 KIF1BO60333 1816 aa11.74□□□□□ -0.53
CD44-205ENST00000352818 CPDO75976 1380 aa11.73□□□□□ -0.53
CD44-205ENST00000352818 POLD1P28340 1107 aa11.73□□□□□ -0.53
CD44-205ENST00000352818 TNS2Q63HR2 1409 aa11.73□□□□□ -0.53
CD44-205ENST00000352818 PNPLA7Q6ZV29 1317 aa11.73□□□□□ -0.53
CD44-205ENST00000352818 SLC16A10Q8TF71 515 aa11.72□□□□□ -0.53
CD44-205ENST00000352818 PRAM1Q96QH2 718 aa11.72□□□□□ -0.53
CD44-205ENST00000352818 CRB1P82279 1406 aa11.71□□□□□ -0.53
CD44-205ENST00000352818 PIK3C2GO75747 1445 aa11.7□□□□□ -0.54
CD44-205ENST00000352818 HSPA1AP0DMV8 641 aaKnown RBP11.7□□□□□ -0.54
CD44-205ENST00000352818 HSPA1BP0DMV9 641 aaKnown RBP11.7□□□□□ -0.54
CD44-205ENST00000352818 TOPAZ1Q8N9V7 1692 aa11.69□□□□□ -0.54
CD44-205ENST00000352818 SIN3AQ96ST3 1273 aa11.69□□□□□ -0.54
CD44-205ENST00000352818 TONSLQ96HA7 1378 aa11.68□□□□□ -0.54
CD44-205ENST00000352818 NGDNQ8NEJ9 315 aaKnown RBP11.68□□□□□ -0.54
CD44-205ENST00000352818 HIRIP3Q9BW71 556 aaPredicted RBP11.68□□□□□ -0.54
CD44-205ENST00000352818 NMRK2Q9NPI5 230 aa11.68□□□□□ -0.54
CD44-205ENST00000352818 USP19O94966 1318 aa11.67□□□□□ -0.54
CD44-205ENST00000352818 FAM161AQ3B820 660 aa11.67□□□□□ -0.54
CD44-205ENST00000352818 MPHOSPH9Q99550 1183 aa11.66□□□□□ -0.54
CD44-205ENST00000352818 ARHGEF28Q8N1W1 1705 aaKnown RBP11.66□□□□□ -0.54
CD44-205ENST00000352818 ANKRD30BQ9BXX2 1392 aa11.66□□□□□ -0.54
CD44-205ENST00000352818 TULP4Q9NRJ4 1543 aa11.65□□□□□ -0.54
CD44-205ENST00000352818 RBM46Q8TBY0 533 aaKnown RBP11.65□□□□□ -0.54
CD44-205ENST00000352818 SPATA31E1Q6ZUB1 1445 aa11.64□□□□□ -0.55
CD44-205ENST00000352818 NEUROD1Q13562 356 aa11.64□□□□□ -0.55
CD44-205ENST00000352818 ACSBG1Q96GR2 724 aa11.64□□□□□ -0.55
CD44-205ENST00000352818 C14orf93Q9H972 538 aaKnown RBP11.64□□□□□ -0.55
CD44-205ENST00000352818 GCP02774 474 aa11.63□□□□□ -0.55
CD44-205ENST00000352818 KCNQ4P56696 695 aa11.63□□□□□ -0.55
CD44-205ENST00000352818 CD2APQ9Y5K6 639 aa11.63□□□□□ -0.55
CD44-205ENST00000352818 NHSQ6T4R5 1651 aa11.62□□□□□ -0.55
CD44-205ENST00000352818 RGL3Q3MIN7 710 aa11.62□□□□□ -0.55
CD44-205ENST00000352818 CFAP70Q5T0N1 1121 aa11.62□□□□□ -0.55
CD44-205ENST00000352818 QSER1Q2KHR3 1735 aa11.62□□□□□ -0.55
CD44-205ENST00000352818 WASLO00401 505 aaPredicted RBP11.61□□□□□ -0.55
CD44-205ENST00000352818 MSL1Q68DK7 614 aa11.61□□□□□ -0.55
CD44-205ENST00000352818 TOM1L2Q6ZVM7 507 aa11.61□□□□□ -0.55
CD44-205ENST00000352818 AXIN2Q9Y2T1 843 aa11.61□□□□□ -0.55
CD44-205ENST00000352818 MINK1Q8N4C8 1332 aaPredicted RBP11.6□□□□□ -0.55
CD44-205ENST00000352818 USP6P35125 1406 aa11.6□□□□□ -0.55
CD44-205ENST00000352818 TUBGCP6Q96RT7 1819 aa11.6□□□□□ -0.55
CD44-205ENST00000352818 FSTL1Q12841 308 aa11.6□□□□□ -0.55
CD44-205ENST00000352818 COL23A1Q86Y22 540 aaPredicted RBP11.6□□□□□ -0.55
CD44-205ENST00000352818 TFCP2L1Q9NZI6 479 aa11.6□□□□□ -0.55
CD44-205ENST00000352818 BRD4O60885 1362 aaPredicted RBP11.59□□□□□ -0.55
CD44-205ENST00000352818 WNK3Q9BYP7 1800 aa11.59□□□□□ -0.55
CD44-205ENST00000352818 CDCA7Q9BWT1 371 aaPredicted RBP11.59□□□□□ -0.55
CD44-205ENST00000352818 POGKQ9P215 609 aa11.59□□□□□ -0.55
CD44-205ENST00000352818 CICQ96RK0 1608 aaPredicted RBP11.59□□□□□ -0.55
CD44-205ENST00000352818 AKAP12Q02952 1782 aa11.59□□□□□ -0.55
CD44-205ENST00000352818 WDR17Q8IZU2 1322 aa11.59□□□□□ -0.55
CD44-205ENST00000352818 IGSF1Q8N6C5 1336 aa11.59□□□□□ -0.55
CD44-205ENST00000352818 POLR3AO14802 1390 aaPredicted RBP11.58□□□□□ -0.56
CD44-205ENST00000352818 SLC4A1APQ9BWU0 796 aaKnown RBP11.58□□□□□ -0.56
CD44-205ENST00000352818 EIF3AQ14152 1382 aaKnown RBP11.57□□□□□ -0.56
CD44-205ENST00000352818 EXOC5O00471 708 aa11.57□□□□□ -0.56
CD44-205ENST00000352818 ABTB2Q8N961 1025 aa11.57□□□□□ -0.56
CD44-205ENST00000352818 NUDT16Q96DE0 195 aaKnown RBP11.57□□□□□ -0.56
CD44-205ENST00000352818 BTAF1O14981 1849 aa11.56□□□□□ -0.56
CD44-205ENST00000352818 SLC27A3Q5K4L6 730 aa11.56□□□□□ -0.56
CD44-205ENST00000352818 CARD10Q9BWT7 1032 aa11.56□□□□□ -0.56
CD44-205ENST00000352818 COL18A1P39060 1754 aa11.56□□□□□ -0.56
CD44-205ENST00000352818 ACEP12821 1306 aa11.56□□□□□ -0.56
CD44-205ENST00000352818 ZBTB7CA1YPR0 619 aa11.55□□□□□ -0.56
CD44-205ENST00000352818 FOXN1O15353 648 aa11.54□□□□□ -0.56
CD44-205ENST00000352818 ADGRB1O14514 1584 aa11.54□□□□□ -0.56
CD44-205ENST00000352818 TRAK1Q9UPV9 953 aa11.53□□□□□ -0.56
CD44-205ENST00000352818 ABCC6O95255 1503 aa11.52□□□□□ -0.57
CD44-205ENST00000352818 RGS19P49795 217 aa11.52□□□□□ -0.57
CD44-205ENST00000352818 NLRP13Q86W25 1043 aa11.52□□□□□ -0.57
CD44-205ENST00000352818 SLIT3O75094 1523 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 TRPM1Q7Z4N2 1603 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 PLEKHG3A1L390 1219 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 MIER1Q8N108 512 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 ABHD8Q96I13 439 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 PRDM10Q9NQV6 1147 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 PPIP5K1Q6PFW1 1433 aa11.51□□□□□ -0.57
CD44-205ENST00000352818 MSH5O43196 834 aa11.5□□□□□ -0.57
CD44-205ENST00000352818 MLLT1Q03111 559 aaPredicted RBP11.5□□□□□ -0.57
CD44-205ENST00000352818 L3MBTL2Q969R5 705 aa11.5□□□□□ -0.57
CD44-205ENST00000352818 C10orf71Q711Q0 1435 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms