RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 HSP90B2PQ58FF3 399 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 EFCAB6Q5THR3 1501 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 MYO3AQ8NEV4 1616 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 ZNF428Q96B54 188 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 AK7Q96M32 723 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 DNAI2Q9GZS0 605 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 AK9Q5TCS8 1911 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 TUBBP07437 444 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 ADRA2BP18089 450 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 MPHOSPH6Q99547 160 aaKnown RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 ABCC6O95255 1503 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 ST18O60284 1047 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 PKD2Q13563 968 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 MYCNP04198 464 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 CT47B1P0C2W7 299 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 IQCEQ6IPM2 695 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 LRRC59Q96AG4 307 aaKnown RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 SBNO1A3KN83 1393 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 MARCH6O60337 910 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 CCDC112Q8NEF3 446 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 MPHOSPH9Q99550 1183 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 FAM135BQ49AJ0 1406 aa3.96□□□□□ -1.77
CSMD3-202ENST00000339701 SOS1Q07889 1333 aaPredicted RBP3.96□□□□□ -1.77
CSMD3-202ENST00000339701 MCM3P25205 808 aa3.96□□□□□ -1.77
CSMD3-202ENST00000339701 RBM5P52756 815 aaKnown RBP eCLIP3.96□□□□□ -1.77
CSMD3-202ENST00000339701 BMS1Q14692 1282 aaKnown RBP3.96□□□□□ -1.77
CSMD3-202ENST00000339701 FANCIQ9NVI1 1328 aa3.96□□□□□ -1.77
CSMD3-202ENST00000339701 DHX29Q7Z478 1369 aaKnown RBP3.96□□□□□ -1.77
CSMD3-202ENST00000339701 ARHGEF11O15085 1522 aa3.96□□□□□ -1.77
CSMD3-202ENST00000339701 PPM1FP49593 454 aaPredicted RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 BCL2L13Q9BXK5 485 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 KDM5BQ9UGL1 1544 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 KIF15Q9NS87 1388 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 PDCP20941 246 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 RNF214Q8ND24 703 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 ADGRL1O94910 1474 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 GOLGA6L10A0A0M3HER8 536 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 HSP90AB1P08238 724 aaKnown RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 ABTB2Q8N961 1025 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 NOC3LQ8WTT2 800 aaKnown RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 TSPYL2Q9H2G4 693 aaPredicted RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 STK11IPQ8N1F8 1099 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 FBXO41Q8TF61 875 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 NAT10Q9H0A0 1025 aaKnown RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 MRS2Q9HD23 443 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 IQGAP1P46940 1657 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 ZCCHC11Q5TAX3 1644 aaKnown RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 RNF20Q5VTR2 975 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.96□□□□□ -1.78
CSMD3-202ENST00000339701 JDP2Q8WYK2 163 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 NLRP2Q9NX02 1062 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 CD109Q6YHK3 1445 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 LMTK2Q8IWU2 1503 aa3.96□□□□□ -1.78
CSMD3-202ENST00000339701 APBB1O00213 710 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NEFHP12036 1026 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 GNL2Q13823 731 aaKnown RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 CREBRFQ8IUR6 639 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 RWDD1Q9H446 243 aaPredicted RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NOP58Q9Y2X3 529 aaKnown RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 ERVK-7P63135 1459 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 TMF1P82094 1093 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 TICAM2Q86XR7 235 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 COG3Q96JB2 828 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 RALGAPBQ86X10 1494 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 AGLP35573 1532 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 RGS12O14924 1447 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NUP155O75694 1391 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 HOOK3Q86VS8 718 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NLRP13Q86W25 1043 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 FAM114A2Q9NRY5 505 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 V9GYY5 206 aaPredicted RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 KIF20BQ96Q89 1820 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 FYB1O15117 783 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 STK31Q9BXU1 1019 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 REC8O95072 547 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NT5C2P49902 561 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 CGNL1Q0VF96 1302 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 FAM184AQ8NB25 1140 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 SIN3AQ96ST3 1273 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 ATP7AQ04656 1500 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 PPIP5K1Q6PFW1 1433 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 OTUD7BQ6GQQ9 843 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 SUPT16HQ9Y5B9 1047 aaKnown RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 KIF1AQ12756 1690 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 NBR1Q14596 966 aa3.95□□□□□ -1.78
CSMD3-202ENST00000339701 GTPBP4Q9BZE4 634 aaKnown RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 ZHX1Q9UKY1 873 aaPredicted RBP3.95□□□□□ -1.78
CSMD3-202ENST00000339701 ST5P78524 1137 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 EXOC5O00471 708 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 RFC4P35249 363 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 PAF1Q8N7H5 531 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 YEATS2Q9ULM3 1422 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 DDX58O95786 925 aaKnown RBP3.94□□□□□ -1.78
CSMD3-202ENST00000339701 TATP17735 454 aaPredicted RBP3.94□□□□□ -1.78
CSMD3-202ENST00000339701 FMNL3Q8IVF7 1028 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 TCIRG1Q13488 830 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 VTI1AQ96AJ9 217 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 DRC1Q96MC2 740 aa3.94□□□□□ -1.78
CSMD3-202ENST00000339701 IGSF3O75054 1194 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms