RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 RBM10P98175 930 aaKnown RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 PDE4CQ08493 712 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 PTPN14Q15678 1187 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC150Q8NCX0 1101 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 ALS2CR12Q96Q35 445 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 COG6Q9Y2V7 657 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 PRPF40AO75400 957 aaKnown RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 KCNH8Q96L42 1107 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC94Q9BW85 323 aaPredicted RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 USH1CQ9Y6N9 552 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 CETN2P41208 172 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 C1orf141Q5JVX7 400 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 VPS36Q86VN1 386 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 PYM1Q9BRP8 204 aaKnown RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 CPSF2Q9P2I0 782 aaKnown RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 EPB41L2O43491 1005 aaKnown RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 TAF4BQ92750 862 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 SLC4A3P48751 1232 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 FAM193AP78312 1265 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 MAP3K11Q16584 847 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 BBXQ8WY36 941 aaPredicted RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 STK38Q15208 465 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 SMAP1Q8IYB5 467 aaPredicted RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 TTC5Q8N0Z6 440 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC57Q2TAC2 916 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 UPF3BQ9BZI7 483 aaKnown RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 PHAXQ9H814 394 aaKnown RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 CLCN1P35523 988 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC50Q8IVM0 306 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 LRRC9Q6ZRR7 1453 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 HSPA4P34932 840 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 SCAND2PQ9GZW5 306 aaPredicted RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 PPP1R12BO60237 982 aaPredicted RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 G3V3G9 751 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 LIG1P18858 919 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 DCAF8Q5TAQ9 597 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 TTC14Q96N46 770 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 FRAT2O75474 233 aaPredicted RBP6.48□□□□□ -1.37
PTPRB-202ENST00000334414 CEP63Q96MT8 703 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC141Q6ZP82 1450 aa6.48□□□□□ -1.37
PTPRB-202ENST00000334414 DIAPH1O60610 1272 aaKnown RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 TMCO5BA8MYB1 307 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 CTDP1Q9Y5B0 961 aaPredicted RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 PRDM2Q13029 1718 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 ERICH4A6NGS2 130 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 DDX46Q7L014 1031 aaKnown RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 KIF20AO95235 890 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 EFCAB2Q5VUJ9 269 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 TRIM22Q8IYM9 498 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 RSRC1Q96IZ7 334 aaKnown RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 SPATA32Q96LK8 384 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC175P0C221 793 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 NOL7Q9UMY1 257 aaKnown RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 HFM1A2PYH4 1435 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 SPA17Q15506 151 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 ANO10Q9NW15 660 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 PANK3Q9H999 370 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 NKTRP30414 1462 aaKnown RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 AMPHP49418 695 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 LMOD2Q6P5Q4 547 aa6.47□□□□□ -1.37
PTPRB-202ENST00000334414 PAIP2Q9BPZ3 127 aaKnown RBP6.47□□□□□ -1.37
PTPRB-202ENST00000334414 GOLIM4O00461 696 aa6.46□□□□□ -1.37
PTPRB-202ENST00000334414 NCBP3Q53F19 620 aaKnown RBP6.46□□□□□ -1.37
PTPRB-202ENST00000334414 MROH2BQ7Z745 1585 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 POTEJP0CG39 1038 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 MSL1Q68DK7 614 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 SMARCC1Q92922 1105 aaPredicted RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 FGFR1OPO95684 399 aaKnown RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 SREK1Q8WXA9 508 aaKnown RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 CKAP4Q07065 602 aaKnown RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 MCM4P33991 863 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 RBM25P49756 843 aaKnown RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 CASKIN1Q8WXD9 1431 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 TIAM1Q13009 1591 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 CTCFLQ8NI51 663 aaPredicted RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 CLIP2Q9UDT6 1046 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 TERF1P54274 439 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 CEP112Q8N8E3 955 aa6.46□□□□□ -1.38
PTPRB-202ENST00000334414 DDX19AQ9NUU7 478 aaKnown RBP6.46□□□□□ -1.38
PTPRB-202ENST00000334414 ZSCAN25Q6NSZ9 544 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 TBC1D2BQ9UPU7 963 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 VGFO15240 615 aaPredicted RBP6.45□□□□□ -1.38
PTPRB-202ENST00000334414 CCT4P50991 539 aaKnown RBP6.45□□□□□ -1.38
PTPRB-202ENST00000334414 DNAJC21Q5F1R6 531 aaKnown RBP6.45□□□□□ -1.38
PTPRB-202ENST00000334414 WWC2Q6AWC2 1192 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 RNF214Q8ND24 703 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 SH2B1Q9NRF2 756 aaPredicted RBP6.45□□□□□ -1.38
PTPRB-202ENST00000334414 SPC24Q8NBT2 197 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 MIPOL1Q8TD10 442 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 IFI16Q16666 785 aaKnown RBP6.45□□□□□ -1.38
PTPRB-202ENST00000334414 UBTFL1P0CB47 393 aaPredicted RBP6.45□□□□□ -1.38
PTPRB-202ENST00000334414 CSB-PGBD3P0DP91 1061 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 CENPHQ9H3R5 247 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 A0A1B0GUA9 196 aa6.45□□□□□ -1.38
PTPRB-202ENST00000334414 OPA1O60313 960 aa6.44□□□□□ -1.38
PTPRB-202ENST00000334414 USO1O60763 962 aaKnown RBP6.44□□□□□ -1.38
PTPRB-202ENST00000334414 POTEDQ86YR6 584 aa6.44□□□□□ -1.38
PTPRB-202ENST00000334414 KIF3CO14782 793 aa6.44□□□□□ -1.38
PTPRB-202ENST00000334414 PPP4R3BQ5MIZ7 849 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms