RNA–Protein interactions for RNA: ENST00000321897.9

VARS2-201, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene VARS2, Length 4,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-201ENST00000321897 ASXL2Q76L83 1435 aa18.54■□□□□ 0.56
VARS2-201ENST00000321897 DTNBO60941 627 aa18.54■□□□□ 0.56
VARS2-201ENST00000321897 TNPO1Q92973 898 aaKnown RBP18.54■□□□□ 0.56
VARS2-201ENST00000321897 ABCC10Q5T3U5 1492 aa18.53■□□□□ 0.56
VARS2-201ENST00000321897 FOXO3O43524 673 aa18.53■□□□□ 0.56
VARS2-201ENST00000321897 NUTM1Q86Y26 1132 aa18.53■□□□□ 0.56
VARS2-201ENST00000321897 MAGI2Q86UL8 1455 aa18.53■□□□□ 0.56
VARS2-201ENST00000321897 POLKQ9UBT6 870 aa18.53■□□□□ 0.56
VARS2-201ENST00000321897 WASLO00401 505 aaPredicted RBP18.52■□□□□ 0.56
VARS2-201ENST00000321897 FBXW7Q969H0 707 aa18.52■□□□□ 0.56
VARS2-201ENST00000321897 MBD5Q9P267 1494 aa18.52■□□□□ 0.56
VARS2-201ENST00000321897 SSFA2P28290 1259 aa18.52■□□□□ 0.56
VARS2-201ENST00000321897 GCC1Q96CN9 775 aa18.52■□□□□ 0.56
VARS2-201ENST00000321897 IFIT2P09913 472 aaKnown RBP18.52■□□□□ 0.55
VARS2-201ENST00000321897 KDM4AO75164 1064 aa18.51■□□□□ 0.55
VARS2-201ENST00000321897 ZC3H6P61129 1189 aaKnown RBP18.51■□□□□ 0.55
VARS2-201ENST00000321897 ADGRL2O95490 1459 aa18.5■□□□□ 0.55
VARS2-201ENST00000321897 CSPP1Q1MSJ5 1256 aa18.5■□□□□ 0.55
VARS2-201ENST00000321897 DUOX2Q9NRD8 1548 aa18.5■□□□□ 0.55
VARS2-201ENST00000321897 NPHP1O15259 732 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 CFAP44Q96MT7 982 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 TBC1D32Q96NH3 1257 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 TULP1O00294 542 aaPredicted RBP18.49■□□□□ 0.55
VARS2-201ENST00000321897 PDCL3Q9H2J4 239 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 MYL6BP14649 208 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 TAF7LQ5H9L4 462 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 MEIS3Q99687 375 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 GNAI2P04899 355 aa18.49■□□□□ 0.55
VARS2-201ENST00000321897 TBC1D9Q6ZT07 1266 aa18.48■□□□□ 0.55
VARS2-201ENST00000321897 A0A1W2PP64 1363 aa18.48■□□□□ 0.55
VARS2-201ENST00000321897 NUCB2P80303 420 aa18.48■□□□□ 0.55
VARS2-201ENST00000321897 AAMPQ13685 434 aa18.48■□□□□ 0.55
VARS2-201ENST00000321897 K7ELQ4 463 aaPredicted RBP18.48■□□□□ 0.55
VARS2-201ENST00000321897 CBX1P83916 185 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 GCC2Q8IWJ2 1684 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 RIC3Q7Z5B4 369 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 SYTL4Q96C24 671 aaPredicted RBP18.47■□□□□ 0.55
VARS2-201ENST00000321897 GPATCH3Q96I76 525 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 MAP7D2Q96T17 732 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 KDM2BQ8NHM5 1336 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 UGGT1Q9NYU2 1555 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 SRGAP3O43295 1099 aa18.47■□□□□ 0.55
VARS2-201ENST00000321897 CCDC30Q5VVM6 783 aa18.46■□□□□ 0.55
VARS2-201ENST00000321897 ARHGEF12Q9NZN5 1544 aa18.46■□□□□ 0.55
VARS2-201ENST00000321897 ZNF530Q6P9A1 599 aaPredicted RBP18.46■□□□□ 0.55
VARS2-201ENST00000321897 NEUROD6Q96NK8 337 aa18.46■□□□□ 0.55
VARS2-201ENST00000321897 SYCE3A1L190 88 aa18.46■□□□□ 0.55
VARS2-201ENST00000321897 TNNT3P45378 269 aaPredicted RBP18.45■□□□□ 0.54
VARS2-201ENST00000321897 PLA2R1Q13018 1463 aa18.45■□□□□ 0.54
VARS2-201ENST00000321897 JARID2Q92833 1246 aaPredicted RBP18.45■□□□□ 0.54
VARS2-201ENST00000321897 ZNF692Q9BU19 519 aaPredicted RBP18.45■□□□□ 0.54
VARS2-201ENST00000321897 AMOTL2Q9Y2J4 779 aa18.45■□□□□ 0.54
VARS2-201ENST00000321897 FIBPO43427 364 aa18.45■□□□□ 0.54
VARS2-201ENST00000321897 GDPD2Q9HCC8 539 aa18.45■□□□□ 0.54
VARS2-201ENST00000321897 TOMM22Q9NS69 142 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 GAS2L2Q8NHY3 880 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 OTUD7AQ8TE49 926 aaPredicted RBP18.44■□□□□ 0.54
VARS2-201ENST00000321897 ACEP12821 1306 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 CT47B1P0C2W7 299 aaPredicted RBP18.44■□□□□ 0.54
VARS2-201ENST00000321897 G3BP1Q13283 466 aaKnown RBP eCLIP18.44■□□□□ 0.541e-6■■□□□ 13
VARS2-201ENST00000321897 CWC27Q6UX04 472 aaKnown RBP18.44■□□□□ 0.54
VARS2-201ENST00000321897 MPRIPQ6WCQ1 1025 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 SPC24Q8NBT2 197 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 CCDC85AQ96PX6 553 aaPredicted RBP18.44■□□□□ 0.54
VARS2-201ENST00000321897 TTC5Q8N0Z6 440 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 TRIM35Q9UPQ4 493 aa18.44■□□□□ 0.54
VARS2-201ENST00000321897 CCDC39Q9UFE4 941 aa18.43■□□□□ 0.54
VARS2-201ENST00000321897 SHANK2Q9UPX8 1470 aa18.43■□□□□ 0.54
VARS2-201ENST00000321897 BCORL1Q5H9F3 1711 aa18.43■□□□□ 0.54
VARS2-201ENST00000321897 PHF14O94880 888 aa18.43■□□□□ 0.54
VARS2-201ENST00000321897 LRRCC1Q9C099 1032 aa18.43■□□□□ 0.54
VARS2-201ENST00000321897 GNAI3P08754 354 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 NEXNQ0ZGT2 675 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 RAPGEF4Q8WZA2 1011 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 ANKRD36BQ8N2N9 1353 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 FAM177BA6PVY3 158 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 STK3Q13188 491 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 RBM27Q9P2N5 1060 aaKnown RBP18.42■□□□□ 0.54
VARS2-201ENST00000321897 POLR3AO14802 1390 aaPredicted RBP18.42■□□□□ 0.54
VARS2-201ENST00000321897 PPFIA3O75145 1194 aa18.42■□□□□ 0.54
VARS2-201ENST00000321897 IFT57Q9NWB7 429 aa18.41■□□□□ 0.54
VARS2-201ENST00000321897 LRRFIP2Q9Y608 721 aaKnown RBP18.41■□□□□ 0.54
VARS2-201ENST00000321897 GNL2Q13823 731 aaKnown RBP18.41■□□□□ 0.54
VARS2-201ENST00000321897 VAMP4O75379 141 aa18.41■□□□□ 0.54
VARS2-201ENST00000321897 SMC3Q9UQE7 1217 aa18.41■□□□□ 0.54
VARS2-201ENST00000321897 CLASRPQ8N2M8 674 aaKnown RBP18.4■□□□□ 0.54
VARS2-201ENST00000321897 NINLQ9Y2I6 1382 aa18.4■□□□□ 0.54
VARS2-201ENST00000321897 ERC2O15083 957 aa18.4■□□□□ 0.54
VARS2-201ENST00000321897 CEBPZQ03701 1054 aaKnown RBP18.4■□□□□ 0.54
VARS2-201ENST00000321897 DNAJC2Q99543 621 aaKnown RBP18.4■□□□□ 0.54
VARS2-201ENST00000321897 RABEP1Q15276 862 aa18.39■□□□□ 0.54
VARS2-201ENST00000321897 ISY1Q9ULR0 285 aaKnown RBP18.39■□□□□ 0.54
VARS2-201ENST00000321897 IGSF3O75054 1194 aa18.39■□□□□ 0.53
VARS2-201ENST00000321897 SRCIN1Q9C0H9 1055 aa18.39■□□□□ 0.53
VARS2-201ENST00000321897 KDM5CP41229 1560 aa18.39■□□□□ 0.53
VARS2-201ENST00000321897 ZKSCAN1P17029 563 aaPredicted RBP18.39■□□□□ 0.53
VARS2-201ENST00000321897 PIP4K2AP48426 406 aaPredicted RBP18.39■□□□□ 0.53
VARS2-201ENST00000321897 GOLGA6L6A8MZA4 724 aa18.39■□□□□ 0.53
VARS2-201ENST00000321897 TAF7Q15545 349 aaPredicted RBP18.39■□□□□ 0.53
VARS2-201ENST00000321897 ALDH1L2Q3SY69 923 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms