RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 NINLQ9Y2I6 1382 aa24.93■■□□□ 1.58
TPM1-203ENST00000317516 TRIM37O94972 964 aa24.92■■□□□ 1.58
TPM1-203ENST00000317516 EN1Q05925 392 aaPredicted RBP24.92■■□□□ 1.58
TPM1-203ENST00000317516 NME9Q86XW9 330 aa24.92■■□□□ 1.58
TPM1-203ENST00000317516 TMF1P82094 1093 aa24.91■■□□□ 1.58
TPM1-203ENST00000317516 CDCA7Q9BWT1 371 aaPredicted RBP24.91■■□□□ 1.58
TPM1-203ENST00000317516 EDC4Q6P2E9 1401 aaKnown RBP24.91■■□□□ 1.58
TPM1-203ENST00000317516 CD163L1Q9NR16 1453 aa24.9■■□□□ 1.58
TPM1-203ENST00000317516 AKAP12Q02952 1782 aa24.9■■□□□ 1.58
TPM1-203ENST00000317516 APBA3O96018 575 aa24.88■■□□□ 1.57
TPM1-203ENST00000317516 DDB1Q16531 1140 aa24.88■■□□□ 1.57
TPM1-203ENST00000317516 CARD10Q9BWT7 1032 aa24.88■■□□□ 1.57
TPM1-203ENST00000317516 A0A1W2PP64 1363 aa24.88■■□□□ 1.57
TPM1-203ENST00000317516 CDCA8Q53HL2 280 aa24.87■■□□□ 1.57
TPM1-203ENST00000317516 USP47Q96K76 1375 aa24.87■■□□□ 1.57
TPM1-203ENST00000317516 DISP2A7MBM2 1401 aa24.86■■□□□ 1.57
TPM1-203ENST00000317516 EZH2Q15910 746 aaKnown RBP24.83■■□□□ 1.57
TPM1-203ENST00000317516 NFAT5O94916 1531 aa24.82■■□□□ 1.56
TPM1-203ENST00000317516 MON2Q7Z3U7 1717 aa24.82■■□□□ 1.56
TPM1-203ENST00000317516 COG3Q96JB2 828 aa24.82■■□□□ 1.56
TPM1-203ENST00000317516 CAMKK2Q96RR4 588 aa24.82■■□□□ 1.56
TPM1-203ENST00000317516 RGPD1P0DJD0 1748 aa24.81■■□□□ 1.56
TPM1-203ENST00000317516 PARD3Q8TEW0 1356 aa24.8■■□□□ 1.56
TPM1-203ENST00000317516 CCDC7Q96M83 1385 aa24.8■■□□□ 1.56
TPM1-203ENST00000317516 COL18A1P39060 1754 aa24.8■■□□□ 1.56
TPM1-203ENST00000317516 EXOC5O00471 708 aa24.8■■□□□ 1.56
TPM1-203ENST00000317516 NLRP2Q9NX02 1062 aa24.79■■□□□ 1.56
TPM1-203ENST00000317516 ABCC6O95255 1503 aa24.79■■□□□ 1.56
TPM1-203ENST00000317516 ANKRD36BQ8N2N9 1353 aa24.79■■□□□ 1.56
TPM1-203ENST00000317516 OVOS2A0A0G2JMS6 1433 aa24.78■■□□□ 1.56
TPM1-203ENST00000317516 OVOS2A0A0J9YW53 1432 aa24.78■■□□□ 1.56
TPM1-203ENST00000317516 OVOS2Q6IE36 1432 aa24.78■■□□□ 1.56
TPM1-203ENST00000317516 ERBB3P21860 1342 aa24.78■■□□□ 1.56
TPM1-203ENST00000317516 PSDA5PKW4 1024 aaPredicted RBP24.77■■□□□ 1.56
TPM1-203ENST00000317516 ANKRD24Q8TF21 1146 aa24.76■■□□□ 1.55
TPM1-203ENST00000317516 CCER1Q8TC90 406 aaPredicted RBP24.75■■□□□ 1.55
TPM1-203ENST00000317516 IP6K1Q92551 441 aa24.75■■□□□ 1.55
TPM1-203ENST00000317516 PARP4Q9UKK3 1724 aaKnown RBP24.75■■□□□ 1.55
TPM1-203ENST00000317516 NBPF14Q5TI25 921 aa24.74■■□□□ 1.55
TPM1-203ENST00000317516 MARCH10Q8NA82 808 aaPredicted RBP24.74■■□□□ 1.55
TPM1-203ENST00000317516 R3HDM1Q15032 1099 aaKnown RBP24.73■■□□□ 1.55
TPM1-203ENST00000317516 BCL11BQ9C0K0 894 aaPredicted RBP24.73■■□□□ 1.55
TPM1-203ENST00000317516 SRCAPQ6ZRS2 3230 aa24.72■■□□□ 1.55
TPM1-203ENST00000317516 IL2RBP14784 551 aa24.71■■□□□ 1.55
TPM1-203ENST00000317516 AMPHP49418 695 aa24.71■■□□□ 1.55
TPM1-203ENST00000317516 USP54Q70EL1 1684 aa24.71■■□□□ 1.55
TPM1-203ENST00000317516 FYB1O15117 783 aa24.7■■□□□ 1.54
TPM1-203ENST00000317516 PLSCR1O15162 318 aa24.7■■□□□ 1.54
TPM1-203ENST00000317516 BCL9O00512 1426 aa24.69■■□□□ 1.54
TPM1-203ENST00000317516 TNS1Q9HBL0 1735 aaKnown RBP24.69■■□□□ 1.54
TPM1-203ENST00000317516 MAP3K19Q56UN5 1328 aa24.67■■□□□ 1.54
TPM1-203ENST00000317516 LTV1Q96GA3 475 aaPredicted RBP24.67■■□□□ 1.54
TPM1-203ENST00000317516 GGNBP2Q9H3C7 697 aa24.67■■□□□ 1.54
TPM1-203ENST00000317516 HOXC9P31274 260 aa24.66■■□□□ 1.54
TPM1-203ENST00000317516 LRRC37A3O60309 1634 aa24.65■■□□□ 1.54
TPM1-203ENST00000317516 RGPD5Q99666 1765 aa24.65■■□□□ 1.54
TPM1-203ENST00000317516 TNS2Q63HR2 1409 aa24.63■■□□□ 1.53
TPM1-203ENST00000317516 FBLN1P23142 703 aa24.63■■□□□ 1.53
TPM1-203ENST00000317516 EIF4G2P78344 907 aaKnown RBP eCLIP24.63■■□□□ 1.53
TPM1-203ENST00000317516 PEAK1Q9H792 1746 aa24.61■■□□□ 1.53
TPM1-203ENST00000317516 RRS1Q15050 365 aaKnown RBP24.6■■□□□ 1.53
TPM1-203ENST00000317516 PTF1AQ7RTS3 328 aa24.6■■□□□ 1.53
TPM1-203ENST00000317516 CARD14Q9BXL6 1004 aa24.6■■□□□ 1.53
TPM1-203ENST00000317516 RTL1A6NKG5 1358 aa24.59■■□□□ 1.53
TPM1-203ENST00000317516 LTN1O94822 1766 aa24.59■■□□□ 1.53
TPM1-203ENST00000317516 POLR3GLQ9BT43 218 aa24.58■■□□□ 1.53
TPM1-203ENST00000317516 KCNQ2O43526 872 aa24.56■■□□□ 1.52
TPM1-203ENST00000317516 DDX54Q8TDD1 881 aaKnown RBP24.56■■□□□ 1.52
TPM1-203ENST00000317516 ACSBG1Q96GR2 724 aa24.56■■□□□ 1.52
TPM1-203ENST00000317516 WNK3Q9BYP7 1800 aa24.55■■□□□ 1.52
TPM1-203ENST00000317516 NSD3Q9BZ95 1437 aa24.54■■□□□ 1.52
TPM1-203ENST00000317516 HSPA5P11021 654 aaKnown RBP24.54■■□□□ 1.52
TPM1-203ENST00000317516 TXNRD1Q16881 649 aa24.54■■□□□ 1.52
TPM1-203ENST00000317516 PROM2Q8N271 834 aa24.54■■□□□ 1.52
TPM1-203ENST00000317516 CGNL1Q0VF96 1302 aa24.54■■□□□ 1.52
TPM1-203ENST00000317516 KIF24Q5T7B8 1368 aa24.54■■□□□ 1.52
TPM1-203ENST00000317516 SMG6Q86US8 1419 aaKnown RBP24.53■■□□□ 1.52
TPM1-203ENST00000317516 ZCRB1Q8TBF4 217 aaKnown RBP24.52■■□□□ 1.52
TPM1-203ENST00000317516 LRP5O75197 1615 aa24.52■■□□□ 1.52
TPM1-203ENST00000317516 HSP90AB2PQ58FF8 381 aa24.51■■□□□ 1.51
TPM1-203ENST00000317516 NBPF6Q5VWK0 638 aa24.51■■□□□ 1.51
TPM1-203ENST00000317516 NBPF4Q96M43 638 aa24.51■■□□□ 1.51
TPM1-203ENST00000317516 RREB1Q92766 1687 aa24.5■■□□□ 1.51
TPM1-203ENST00000317516 RAPGEF4Q8WZA2 1011 aa24.5■■□□□ 1.51
TPM1-203ENST00000317516 INSRP06213 1382 aa24.5■■□□□ 1.51
TPM1-203ENST00000317516 FLT4P35916 1363 aa24.5■■□□□ 1.51
TPM1-203ENST00000317516 SPON1Q9HCB6 807 aa24.49■■□□□ 1.51
TPM1-203ENST00000317516 STK32BQ9NY57 414 aa24.49■■□□□ 1.51
TPM1-203ENST00000317516 SBF2Q86WG5 1849 aa24.48■■□□□ 1.51
TPM1-203ENST00000317516 PPM1GO15355 546 aaPredicted RBP24.47■■□□□ 1.51
TPM1-203ENST00000317516 NUP188Q5SRE5 1749 aa24.47■■□□□ 1.51
TPM1-203ENST00000317516 TATP17735 454 aaPredicted RBP24.46■■□□□ 1.51
TPM1-203ENST00000317516 ANO8Q9HCE9 1232 aaPredicted RBP24.46■■□□□ 1.51
TPM1-203ENST00000317516 FAM208AQ9UK61 1670 aaKnown RBP24.46■■□□□ 1.51
TPM1-203ENST00000317516 RGPD3A6NKT7 1758 aaPredicted RBP24.45■■□□□ 1.5
TPM1-203ENST00000317516 RGPD4Q7Z3J3 1758 aa24.45■■□□□ 1.5
TPM1-203ENST00000317516 USHBP1Q8N6Y0 703 aa24.45■■□□□ 1.5
TPM1-203ENST00000317516 EMILIN1Q9Y6C2 1016 aa24.45■■□□□ 1.5
TPM1-203ENST00000317516 SLC15A2Q16348 729 aa24.43■■□□□ 1.5
TPM1-203ENST00000317516 SYTL4Q96C24 671 aaPredicted RBP24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms