RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ERLIN1O75477 346 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 CCT4P50991 539 aaKnown RBP10.99□□□□□ -0.65
CUX1-201ENST00000292535 STRN4Q9NRL3 753 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 CFAP45Q9UL16 551 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 SLC26A8Q96RN1 970 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 PPP1R1BQ9UD71 204 aaPredicted RBP10.99□□□□□ -0.65
CUX1-201ENST00000292535 WDHD1O75717 1129 aaPredicted RBP10.99□□□□□ -0.65
CUX1-201ENST00000292535 RBM5P52756 815 aaKnown RBP eCLIP10.99□□□□□ -0.654e-7■■■□□ 19.1
CUX1-201ENST00000292535 CNTLNQ9NXG0 1405 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 GCC1Q96CN9 775 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 CENPHQ9H3R5 247 aa10.99□□□□□ -0.65
CUX1-201ENST00000292535 CCDC97Q96F63 343 aaPredicted RBP10.99□□□□□ -0.65
CUX1-201ENST00000292535 ATP2B1P20020 1258 aa10.98□□□□□ -0.65
CUX1-201ENST00000292535 FIBPO43427 364 aa10.98□□□□□ -0.65
CUX1-201ENST00000292535 PPP4R3AQ6IN85 833 aa10.98□□□□□ -0.65
CUX1-201ENST00000292535 CCDC150Q8NCX0 1101 aa10.98□□□□□ -0.65
CUX1-201ENST00000292535 TNMDQ9H2S6 317 aa10.98□□□□□ -0.65
CUX1-201ENST00000292535 RBM42Q9BTD8 480 aaKnown RBP10.98□□□□□ -0.65
CUX1-201ENST00000292535 ZNF397Q8NF99 534 aaPredicted RBP10.97□□□□□ -0.65
CUX1-201ENST00000292535 TATP17735 454 aaPredicted RBP10.97□□□□□ -0.65
CUX1-201ENST00000292535 STAMBPO95630 424 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 ZNF287Q9HBT7 754 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 SPG7Q9UQ90 795 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 IMMTQ16891 758 aaKnown RBP10.97□□□□□ -0.65
CUX1-201ENST00000292535 WDR33Q9C0J8 1336 aaKnown RBP10.97□□□□□ -0.65
CUX1-201ENST00000292535 CETN2P41208 172 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 SKIDA1Q1XH10 827 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 NEK4P51957 841 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 ANAPC15P60006 121 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 HSP90AB3PQ58FF7 597 aa10.97□□□□□ -0.65
CUX1-201ENST00000292535 HDGFL1Q5TGJ6 251 aa10.96□□□□□ -0.65
CUX1-201ENST00000292535 LRRCC1Q9C099 1032 aa10.96□□□□□ -0.65
CUX1-201ENST00000292535 ESCO1Q5FWF5 840 aa10.96□□□□□ -0.65
CUX1-201ENST00000292535 FAM69CQ0P6D2 419 aa10.96□□□□□ -0.65
CUX1-201ENST00000292535 CYP46A1Q9Y6A2 500 aa10.96□□□□□ -0.65
CUX1-201ENST00000292535 BRD4O60885 1362 aaPredicted RBP10.96□□□□□ -0.65
CUX1-201ENST00000292535 RNF214Q8ND24 703 aa10.96□□□□□ -0.65
CUX1-201ENST00000292535 SSR1P43307 286 aaKnown RBP10.96□□□□□ -0.66
CUX1-201ENST00000292535 IGHMBP2P38935 993 aaKnown RBP10.96□□□□□ -0.66
CUX1-201ENST00000292535 PHAXQ9H814 394 aaKnown RBP10.96□□□□□ -0.66
CUX1-201ENST00000292535 ARHGAP5Q13017 1502 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 NUP133Q8WUM0 1156 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 CABP2Q9NPB3 220 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 CABP4P57796 275 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 KIAA1328Q86T90 577 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 KDM4AO75164 1064 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 ZNF76P36508 570 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 VPS36Q86VN1 386 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 GRIPAP1Q4V328 841 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 FGFR1OPO95684 399 aaKnown RBP10.95□□□□□ -0.66
CUX1-201ENST00000292535 CYB5RLQ6IPT4 315 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 USP8P40818 1118 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 MTHFSP49914 203 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 URB1O60287 2271 aaKnown RBP10.95□□□□□ -0.66
CUX1-201ENST00000292535 MAP9Q49MG5 647 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 CEP57L1Q8IYX8 460 aa10.95□□□□□ -0.66
CUX1-201ENST00000292535 KRT32Q14532 448 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 DYDC1Q8WWB3 177 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 CEBPZQ03701 1054 aaKnown RBP10.94□□□□□ -0.66
CUX1-201ENST00000292535 PPM1EQ8WY54 764 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 PLCD4Q9BRC7 762 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 NUTM2GQ5VZR2 741 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 TAX1BP1Q86VP1 789 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 CCDC148Q8NFR7 591 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 MYO10Q9HD67 2058 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 WIZO95785 1651 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 CUL5Q93034 780 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 ZSCAN31Q96LW9 406 aaPredicted RBP10.94□□□□□ -0.66
CUX1-201ENST00000292535 BCL11BQ9C0K0 894 aaPredicted RBP10.94□□□□□ -0.66
CUX1-201ENST00000292535 TAF4BQ92750 862 aa10.94□□□□□ -0.66
CUX1-201ENST00000292535 U3KPZ7 1027 aaPredicted RBP10.93□□□□□ -0.66
CUX1-201ENST00000292535 TDO2P48775 406 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 NF2P35240 595 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 TAF3Q5VWG9 929 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 HOOK3Q86VS8 718 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 SLF2Q8IX21 1173 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 PANK1Q8TE04 598 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 PDE3AQ14432 1141 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 MROH2BQ7Z745 1585 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 FERMT1Q9BQL6 677 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 MCM3P25205 808 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 AACSQ86V21 672 aa10.93□□□□□ -0.66
CUX1-201ENST00000292535 EIF5P55010 431 aaKnown RBP10.92□□□□□ -0.66
CUX1-201ENST00000292535 SPA17Q15506 151 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 ARHGAP29Q52LW3 1261 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 SMTNL1A8MU46 457 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 TMEM87AQ8NBN3 555 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 FMNL2Q96PY5 1086 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 SPATA32Q96LK8 384 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 ADAMTS8Q9UP79 889 aa10.92□□□□□ -0.66
CUX1-201ENST00000292535 KRT85P78386 507 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 TWISTNBQ3B726 338 aaPredicted RBP10.91□□□□□ -0.66
CUX1-201ENST00000292535 FAM177BA6PVY3 158 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 RAB34Q9BZG1 259 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 PPP6R1Q9UPN7 881 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 SSBP05455 408 aaKnown RBP eCLIP10.91□□□□□ -0.66
CUX1-201ENST00000292535 LARP1BQ659C4 914 aaKnown RBP10.91□□□□□ -0.66
CUX1-201ENST00000292535 GIGYF2Q6Y7W6 1299 aaKnown RBP10.91□□□□□ -0.66
CUX1-201ENST00000292535 LRRFIP2Q9Y608 721 aaKnown RBP10.91□□□□□ -0.66
CUX1-201ENST00000292535 GOLGA6L10A0A0M3HER8 536 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms