RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 NFE2L2Q16236 605 aa34.21■■■■□ 3.07
CBX4-201ENST00000269397 MBIPQ9NS73 344 aa34.21■■■■□ 3.07
CBX4-201ENST00000269397 FAM135BQ49AJ0 1406 aa34.21■■■■□ 3.07
CBX4-201ENST00000269397 ANKRD26Q9UPS8 1709 aa34.2■■■■□ 3.07
CBX4-201ENST00000269397 BRPF1P55201 1214 aaPredicted RBP34.19■■■■□ 3.06
CBX4-201ENST00000269397 YTHDC2Q9H6S0 1430 aaKnown RBP34.19■■■■□ 3.06
CBX4-201ENST00000269397 EMILIN1Q9Y6C2 1016 aa34.18■■■■□ 3.06
CBX4-201ENST00000269397 TRIM44Q96DX7 344 aaPredicted RBP34.18■■■■□ 3.06
CBX4-201ENST00000269397 MYO5BQ9ULV0 1848 aa34.18■■■■□ 3.06
CBX4-201ENST00000269397 ZNF428Q96B54 188 aa34.17■■■■□ 3.06
CBX4-201ENST00000269397 ISY1Q9ULR0 285 aaKnown RBP34.17■■■■□ 3.06
CBX4-201ENST00000269397 GSPT1P15170 499 aaKnown RBP34.16■■■■□ 3.06
CBX4-201ENST00000269397 TWISTNBQ3B726 338 aaPredicted RBP34.16■■■■□ 3.06
CBX4-201ENST00000269397 C8orf58Q8NAV2 365 aa34.16■■■■□ 3.06
CBX4-201ENST00000269397 SKOR2Q2VWA4 1001 aaPredicted RBP34.15■■■■□ 3.06
CBX4-201ENST00000269397 ARHGAP45Q92619 1136 aa34.15■■■■□ 3.06
CBX4-201ENST00000269397 ZFYVE9O95405 1425 aa34.14■■■■□ 3.06
CBX4-201ENST00000269397 PTCH1Q13635 1447 aa34.14■■■■□ 3.06
CBX4-201ENST00000269397 CDC45O75419 566 aa34.14■■■■□ 3.06
CBX4-201ENST00000269397 SLC52A1Q9NWF4 448 aa34.14■■■■□ 3.06
CBX4-201ENST00000269397 ABCC4O15439 1325 aa34.13■■■■□ 3.05
CBX4-201ENST00000269397 FAM83GA6ND36 823 aa34.13■■■■□ 3.05
CBX4-201ENST00000269397 GNAI1P63096 354 aa34.13■■■■□ 3.05
CBX4-201ENST00000269397 WAPLQ7Z5K2 1190 aa34.13■■■■□ 3.05
CBX4-201ENST00000269397 CHMP4BQ9H444 224 aaKnown RBP34.13■■■■□ 3.05
CBX4-201ENST00000269397 AK9Q5TCS8 1911 aa34.12■■■■□ 3.05
CBX4-201ENST00000269397 C16orf71Q8IYS4 520 aaPredicted RBP34.12■■■■□ 3.05
CBX4-201ENST00000269397 PIK3R4Q99570 1358 aa34.12■■■■□ 3.05
CBX4-201ENST00000269397 DCTN1Q14203 1278 aa34.11■■■■□ 3.05
CBX4-201ENST00000269397 IFT57Q9NWB7 429 aa34.11■■■■□ 3.05
CBX4-201ENST00000269397 ZRANB1Q9UGI0 708 aa34.11■■■■□ 3.05
CBX4-201ENST00000269397 FBXO31Q5XUX0 539 aaPredicted RBP34.1■■■■□ 3.05
CBX4-201ENST00000269397 PLEKHM2Q8IWE5 1019 aa34.09■■■■□ 3.05
CBX4-201ENST00000269397 DDX49Q9Y6V7 483 aaKnown RBP34.08■■■■□ 3.05
CBX4-201ENST00000269397 KIF20BQ96Q89 1820 aa34.07■■■■□ 3.04
CBX4-201ENST00000269397 CALD1Q05682 793 aaKnown RBP34.07■■■■□ 3.04
CBX4-201ENST00000269397 BAG4O95429 457 aaKnown RBP34.07■■■■□ 3.04
CBX4-201ENST00000269397 ZNF853P0CG23 659 aa34.07■■■■□ 3.04
CBX4-201ENST00000269397 ARHGEF40Q8TER5 1519 aa34.06■■■■□ 3.04
CBX4-201ENST00000269397 APBB1O00213 710 aa34.06■■■■□ 3.04
CBX4-201ENST00000269397 NME9Q86XW9 330 aa34.05■■■■□ 3.04
CBX4-201ENST00000269397 OTUD7AQ8TE49 926 aaPredicted RBP34.05■■■■□ 3.04
CBX4-201ENST00000269397 CDC42BPGQ6DT37 1551 aa34.05■■■■□ 3.04
CBX4-201ENST00000269397 GOLGA6L22H0YM25 854 aa34.05■■■■□ 3.04
CBX4-201ENST00000269397 IL13P35225 146 aa34.05■■■■□ 3.04
CBX4-201ENST00000269397 MAP2P11137 1827 aaKnown RBP34.04■■■■□ 3.04
CBX4-201ENST00000269397 CLTCQ00610 1675 aaKnown RBP34.04■■■■□ 3.04
CBX4-201ENST00000269397 STAG3Q9UJ98 1225 aa34.03■■■■□ 3.04
CBX4-201ENST00000269397 PTMSP20962 102 aa34.02■■■■□ 3.04
CBX4-201ENST00000269397 RRS1Q15050 365 aaKnown RBP34.02■■■■□ 3.04
CBX4-201ENST00000269397 CFAP44Q96MT7 982 aa34.02■■■■□ 3.04
CBX4-201ENST00000269397 API5Q9BZZ5 524 aaKnown RBP34.02■■■■□ 3.04
CBX4-201ENST00000269397 ARHGAP31Q2M1Z3 1444 aa34.01■■■■□ 3.04
CBX4-201ENST00000269397 NASPP49321 788 aaPredicted RBP34.01■■■■□ 3.04
CBX4-201ENST00000269397 PKP1Q13835 747 aa34.01■■■■□ 3.04
CBX4-201ENST00000269397 MCTP1Q6DN14 999 aa34.01■■■■□ 3.04
CBX4-201ENST00000269397 NCLP19338 710 aaKnown RBP34.01■■■■□ 3.03
CBX4-201ENST00000269397 KRT24Q2M2I5 525 aa34■■■■□ 3.03
CBX4-201ENST00000269397 TMEM131LA2VDJ0 1609 aa33.99■■■■□ 3.03
CBX4-201ENST00000269397 TTC22Q5TAA0 569 aa33.99■■■■□ 3.03
CBX4-201ENST00000269397 DIP2CQ9Y2E4 1556 aa33.99■■■■□ 3.03
CBX4-201ENST00000269397 DCTPP1Q9H773 170 aa33.98■■■■□ 3.03
CBX4-201ENST00000269397 KLHL40Q2TBA0 621 aa33.98■■■■□ 3.03
CBX4-201ENST00000269397 SMARCA5O60264 1052 aaPredicted RBP33.97■■■■□ 3.03
CBX4-201ENST00000269397 RABEP1Q15276 862 aa33.97■■■■□ 3.03
CBX4-201ENST00000269397 KNDC1Q76NI1 1749 aa33.96■■■■□ 3.03
CBX4-201ENST00000269397 ALKQ9UM73 1620 aa33.96■■■■□ 3.03
CBX4-201ENST00000269397 YEATS2Q9ULM3 1422 aa33.96■■■■□ 3.03
CBX4-201ENST00000269397 USP26Q9BXU7 913 aa33.96■■■■□ 3.03
CBX4-201ENST00000269397 NCKAP5LQ9HCH0 1330 aa33.95■■■■□ 3.03
CBX4-201ENST00000269397 HSP90AA2PQ14568 343 aaPredicted RBP33.95■■■■□ 3.02
CBX4-201ENST00000269397 CAVIN1Q6NZI2 390 aaKnown RBP33.94■■■■□ 3.02
CBX4-201ENST00000269397 CLEC17AQ6ZS10 378 aa33.93■■■■□ 3.02
CBX4-201ENST00000269397 RIMS2Q9UQ26 1411 aa33.92■■■■□ 3.02
CBX4-201ENST00000269397 CCDC173Q0VFZ6 552 aa33.92■■■■□ 3.02
CBX4-201ENST00000269397 SDSP20132 328 aa33.91■■■■□ 3.02
CBX4-201ENST00000269397 ZGPATQ8N5A5 531 aaKnown RBP33.91■■■■□ 3.02
CBX4-201ENST00000269397 DLG5Q8TDM6 1919 aa33.9■■■■□ 3.02
CBX4-201ENST00000269397 CHAMP1Q96JM3 812 aa33.9■■■■□ 3.02
CBX4-201ENST00000269397 PREX1Q8TCU6 1659 aa33.89■■■■□ 3.02
CBX4-201ENST00000269397 LMOD3Q0VAK6 560 aa33.89■■■■□ 3.02
CBX4-201ENST00000269397 INTS3Q68E01 1043 aaKnown RBP33.89■■■■□ 3.02
CBX4-201ENST00000269397 ANKRD44Q8N8A2 993 aa33.88■■■■□ 3.01
CBX4-201ENST00000269397 ANP32BQ92688 251 aaKnown RBP33.88■■■■□ 3.01
CBX4-201ENST00000269397 PPP1R9BQ96SB3 815 aa33.88■■■■□ 3.01
CBX4-201ENST00000269397 AEBP1Q8IUX7 1158 aa33.87■■■■□ 3.01
CBX4-201ENST00000269397 LMBRD1Q9NUN5 540 aa33.87■■■■□ 3.01
CBX4-201ENST00000269397 NUCB2P80303 420 aa33.86■■■■□ 3.01
CBX4-201ENST00000269397 CEP85Q6P2H3 762 aa33.86■■■■□ 3.01
CBX4-201ENST00000269397 OSCARQ8IYS5 282 aa33.86■■■■□ 3.01
CBX4-201ENST00000269397 ATP7BP35670 1465 aa33.85■■■■□ 3.01
CBX4-201ENST00000269397 ZSCAN23Q3MJ62 389 aa33.85■■■■□ 3.01
CBX4-201ENST00000269397 COG3Q96JB2 828 aa33.84■■■■□ 3.01
CBX4-201ENST00000269397 MEIS3Q99687 375 aa33.84■■■■□ 3.01
CBX4-201ENST00000269397 ATP10DQ9P241 1426 aa33.84■■■■□ 3.01
CBX4-201ENST00000269397 CYP2E1P05181 493 aaPredicted RBP33.84■■■■□ 3.01
CBX4-201ENST00000269397 PRPF40AO75400 957 aaKnown RBP33.83■■■■□ 3.01
CBX4-201ENST00000269397 MCM10Q7L590 875 aa33.83■■■■□ 3.01
CBX4-201ENST00000269397 RBM27Q9P2N5 1060 aaKnown RBP33.83■■■■□ 3.01
CBX4-201ENST00000269397 FOXD4L5Q5VV16 416 aaPredicted RBP33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms