RNA–Protein interactions for RNA: ENST00000229330.8

HCFC2-201, Transcript of host cell factor C2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HCFC2, Length 5,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-201ENST00000229330 UBXN4Q92575 508 aa16.41■□□□□ 0.22
HCFC2-201ENST00000229330 ZNF396Q96N95 335 aaPredicted RBP16.41■□□□□ 0.22
HCFC2-201ENST00000229330 TEFQ10587 303 aa16.41■□□□□ 0.22
HCFC2-201ENST00000229330 KIF2AO00139 706 aaPredicted RBP16.41■□□□□ 0.22
HCFC2-201ENST00000229330 TTLL5Q6EMB2 1281 aa16.41■□□□□ 0.22
HCFC2-201ENST00000229330 TMCO3Q6UWJ1 677 aa16.41■□□□□ 0.22
HCFC2-201ENST00000229330 SPDYE4A6NLX3 237 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 USP8P40818 1118 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 BAG4O95429 457 aaKnown RBP16.4■□□□□ 0.22
HCFC2-201ENST00000229330 PTPN14Q15678 1187 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 CCDC47Q96A33 483 aaKnown RBP16.4■□□□□ 0.22
HCFC2-201ENST00000229330 CYP46A1Q9Y6A2 500 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 NEXNQ0ZGT2 675 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 FILIP1Q7Z7B0 1213 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 USP25Q9UHP3 1055 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 TRDNQ13061 729 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 MAP3K11Q16584 847 aa16.4■□□□□ 0.22
HCFC2-201ENST00000229330 SKIDA1Q1XH10 827 aa16.39■□□□□ 0.21
HCFC2-201ENST00000229330 C8orf34Q49A92 452 aa16.39■□□□□ 0.21
HCFC2-201ENST00000229330 RRAGDQ9NQL2 400 aaPredicted RBP16.39■□□□□ 0.21
HCFC2-201ENST00000229330 MAP3K1Q13233 1512 aa16.39■□□□□ 0.21
HCFC2-201ENST00000229330 CEBPZQ03701 1054 aaKnown RBP16.39■□□□□ 0.21
HCFC2-201ENST00000229330 DCTN1Q14203 1278 aa16.39■□□□□ 0.21
HCFC2-201ENST00000229330 LARP1BQ659C4 914 aaKnown RBP16.39■□□□□ 0.21
HCFC2-201ENST00000229330 RARSP54136 660 aaKnown RBP16.38■□□□□ 0.21
HCFC2-201ENST00000229330 DUSP27Q5VZP5 1158 aa16.38■□□□□ 0.21
HCFC2-201ENST00000229330 SURF6O75683 361 aaKnown RBP16.38■□□□□ 0.21
HCFC2-201ENST00000229330 SERPINC1P01008 464 aa16.38■□□□□ 0.21
HCFC2-201ENST00000229330 TMEM57Q8N5G2 664 aa16.38■□□□□ 0.21
HCFC2-201ENST00000229330 CCDC191Q8NCU4 936 aa16.38■□□□□ 0.21
HCFC2-201ENST00000229330 SAFBQ15424 915 aaKnown RBP eCLIP16.38■□□□□ 0.21
HCFC2-201ENST00000229330 OFD1O75665 1012 aa16.38■□□□□ 0.21
HCFC2-201ENST00000229330 SPATA32Q96LK8 384 aa16.38■□□□□ 0.21
HCFC2-201ENST00000229330 KIAA0754O94854 1291 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 IGHDP01880 384 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 ZNF608Q9ULD9 1512 aaPredicted RBP16.37■□□□□ 0.21
HCFC2-201ENST00000229330 CLASRPQ8N2M8 674 aaKnown RBP16.37■□□□□ 0.21
HCFC2-201ENST00000229330 SMARCE1Q969G3 411 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 PRAM1Q96QH2 718 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 CAMSAP2Q08AD1 1489 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 GNAI2P04899 355 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 ZSCAN23Q3MJ62 389 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 KIF18AQ8NI77 898 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 CCDC141Q6ZP82 1450 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 TNNT1P13805 278 aa16.37■□□□□ 0.21
HCFC2-201ENST00000229330 PRKAR2BP31323 418 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 NAP1L1P55209 391 aaKnown RBP16.36■□□□□ 0.21
HCFC2-201ENST00000229330 PTPN23Q9H3S7 1636 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 CEP57L1Q8IYX8 460 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 BBXQ8WY36 941 aaPredicted RBP16.36■□□□□ 0.21
HCFC2-201ENST00000229330 FSD1Q9BTV5 496 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 STK38Q15208 465 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 FAM177A1Q8N128 213 aaPredicted RBP16.36■□□□□ 0.21
HCFC2-201ENST00000229330 SLC52A1Q9NWF4 448 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 HIP1O00291 1037 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 ANKRD1Q15327 319 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 LRRCC1Q9C099 1032 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 MARCH6O60337 910 aa16.36■□□□□ 0.21
HCFC2-201ENST00000229330 ABCC5O15440 1437 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 NFXL1Q6ZNB6 911 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 TXNDC2Q86VQ3 553 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 ZSCAN31Q96LW9 406 aaPredicted RBP16.35■□□□□ 0.21
HCFC2-201ENST00000229330 FILIP1LQ4L180 1135 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 HSP90AB3PQ58FF7 597 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 GTPBP4Q9BZE4 634 aaKnown RBP16.35■□□□□ 0.21
HCFC2-201ENST00000229330 TRERF1Q96PN7 1200 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 ADCY5O95622 1261 aa16.35■□□□□ 0.21
HCFC2-201ENST00000229330 CBFA2T2O43439 604 aa16.34■□□□□ 0.21
HCFC2-201ENST00000229330 UVSSAQ2YD98 709 aa16.34■□□□□ 0.21
HCFC2-201ENST00000229330 ZKSCAN5Q9Y2L8 839 aa16.34■□□□□ 0.21
HCFC2-201ENST00000229330 TIGD1Q96MW7 591 aa16.34■□□□□ 0.21
HCFC2-201ENST00000229330 CCDC94Q9BW85 323 aaPredicted RBP16.34■□□□□ 0.21
HCFC2-201ENST00000229330 SLC12A5Q9H2X9 1139 aa16.34■□□□□ 0.21
HCFC2-201ENST00000229330 PDIA4P13667 645 aaKnown RBP16.34■□□□□ 0.21
HCFC2-201ENST00000229330 EVA1CP58658 441 aa16.34■□□□□ 0.21
HCFC2-201ENST00000229330 RALYLQ86SE5 291 aaKnown RBP16.34■□□□□ 0.21
HCFC2-201ENST00000229330 C16orf45Q96MC5 204 aaPredicted RBP16.34■□□□□ 0.21
HCFC2-201ENST00000229330 DDX58O95786 925 aaKnown RBP16.33■□□□□ 0.21
HCFC2-201ENST00000229330 ME1P48163 572 aa16.33■□□□□ 0.21
HCFC2-201ENST00000229330 RBM27Q9P2N5 1060 aaKnown RBP16.33■□□□□ 0.21
HCFC2-201ENST00000229330 LRSAM1Q6UWE0 723 aa16.33■□□□□ 0.2
HCFC2-201ENST00000229330 HS1BP3Q53T59 392 aa16.33■□□□□ 0.2
HCFC2-201ENST00000229330 ZNF428Q96B54 188 aa16.33■□□□□ 0.2
HCFC2-201ENST00000229330 SRCIN1Q9C0H9 1055 aa16.33■□□□□ 0.2
HCFC2-201ENST00000229330 RRP12Q5JTH9 1297 aaKnown RBP16.32■□□□□ 0.2
HCFC2-201ENST00000229330 CCDC102AQ96A19 550 aa16.32■□□□□ 0.2
HCFC2-201ENST00000229330 UPF3BQ9BZI7 483 aaKnown RBP16.32■□□□□ 0.2
HCFC2-201ENST00000229330 SMAP1Q8IYB5 467 aaPredicted RBP16.32■□□□□ 0.2
HCFC2-201ENST00000229330 PPP6R1Q9UPN7 881 aa16.32■□□□□ 0.2
HCFC2-201ENST00000229330 CAMK4Q16566 473 aa16.32■□□□□ 0.2
HCFC2-201ENST00000229330 NUTM2GQ5VZR2 741 aa16.32■□□□□ 0.2
HCFC2-201ENST00000229330 PDRG1Q9NUG6 133 aa16.32■□□□□ 0.2
HCFC2-201ENST00000229330 RPAP2Q8IXW5 612 aaPredicted RBP16.32■□□□□ 0.2
HCFC2-201ENST00000229330 NOL10Q9BSC4 688 aaKnown RBP16.32■□□□□ 0.2
HCFC2-201ENST00000229330 CFAP45Q9UL16 551 aa16.32■□□□□ 0.2
HCFC2-201ENST00000229330 GTF2F1P35269 517 aaKnown RBP eCLIP16.31■□□□□ 0.2
HCFC2-201ENST00000229330 PLEKHH1Q9ULM0 1364 aa16.31■□□□□ 0.2
HCFC2-201ENST00000229330 NLRP6P59044 892 aa16.31■□□□□ 0.2
HCFC2-201ENST00000229330 NOLC1Q14978 699 aaKnown RBP eCLIP16.31■□□□□ 0.2
HCFC2-201ENST00000229330 KIF14Q15058 1648 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms