RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 CEP89Q96ST8 783 aa13.9□□□□□ -0.18
NOD1-201ENST00000222823 ERICH2A1L162 156 aa13.9□□□□□ -0.18
NOD1-201ENST00000222823 RAD21O60216 631 aa13.9□□□□□ -0.18
NOD1-201ENST00000222823 RARSP54136 660 aaKnown RBP13.9□□□□□ -0.18
NOD1-201ENST00000222823 MVPQ14764 893 aaKnown RBP13.9□□□□□ -0.18
NOD1-201ENST00000222823 FSD1Q9BTV5 496 aa13.9□□□□□ -0.18
NOD1-201ENST00000222823 SLC26A8Q96RN1 970 aa13.9□□□□□ -0.19
NOD1-201ENST00000222823 NSD2O96028 1365 aa13.89□□□□□ -0.19
NOD1-201ENST00000222823 CDC42BPAQ5VT25 1732 aa13.89□□□□□ -0.19
NOD1-201ENST00000222823 DHX16O60231 1041 aaKnown RBP13.89□□□□□ -0.19
NOD1-201ENST00000222823 ATF7IPQ6VMQ6 1270 aa13.89□□□□□ -0.19
NOD1-201ENST00000222823 GOLGA6L1Q8N7Z2 621 aa13.89□□□□□ -0.19
NOD1-201ENST00000222823 GNAI2P04899 355 aa13.89□□□□□ -0.19
NOD1-201ENST00000222823 NEK4P51957 841 aa13.89□□□□□ -0.19
NOD1-201ENST00000222823 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.89□□□□□ -0.19
NOD1-201ENST00000222823 BLMP54132 1417 aaPredicted RBP13.89□□□□□ -0.19
NOD1-201ENST00000222823 PREX2Q70Z35 1606 aa13.88□□□□□ -0.19
NOD1-201ENST00000222823 CCDC73Q6ZRK6 1079 aa13.88□□□□□ -0.19
NOD1-201ENST00000222823 SKAP1Q86WV1 359 aa13.88□□□□□ -0.19
NOD1-201ENST00000222823 PLEKHH1Q9ULM0 1364 aa13.88□□□□□ -0.19
NOD1-201ENST00000222823 SAFBQ15424 915 aaKnown RBP eCLIP13.88□□□□□ -0.19
NOD1-201ENST00000222823 MYO5CQ9NQX4 1742 aa13.88□□□□□ -0.19
NOD1-201ENST00000222823 PDE4CQ08493 712 aa13.88□□□□□ -0.19
NOD1-201ENST00000222823 CCAR2Q8N163 923 aaKnown RBP13.87□□□□□ -0.19
NOD1-201ENST00000222823 POLR3AO14802 1390 aaPredicted RBP13.87□□□□□ -0.19
NOD1-201ENST00000222823 PSMA5P28066 241 aa13.87□□□□□ -0.19
NOD1-201ENST00000222823 ZNF518AQ6AHZ1 1483 aa13.87□□□□□ -0.19
NOD1-201ENST00000222823 ASXL2Q76L83 1435 aa13.87□□□□□ -0.19
NOD1-201ENST00000222823 SASS6Q6UVJ0 657 aa13.87□□□□□ -0.19
NOD1-201ENST00000222823 TRIM34Q9BYJ4 488 aa13.87□□□□□ -0.19
NOD1-201ENST00000222823 ZMYM4Q5VZL5 1548 aa13.87□□□□□ -0.19
NOD1-201ENST00000222823 TPM2P07951 284 aa13.86□□□□□ -0.19
NOD1-201ENST00000222823 HOOK1Q9UJC3 728 aaKnown RBP13.86□□□□□ -0.19
NOD1-201ENST00000222823 TMPOP42166 694 aaKnown RBP13.86□□□□□ -0.19
NOD1-201ENST00000222823 CCDC47Q96A33 483 aaKnown RBP13.86□□□□□ -0.19
NOD1-201ENST00000222823 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.86□□□□□ -0.19
NOD1-201ENST00000222823 CROCC2H7BZ55 1655 aa13.86□□□□□ -0.19
NOD1-201ENST00000222823 FOSBP53539 338 aa13.86□□□□□ -0.19
NOD1-201ENST00000222823 ANKRD20A12PQ8NF67 263 aa13.86□□□□□ -0.19
NOD1-201ENST00000222823 IPO7O95373 1038 aaKnown RBP13.86□□□□□ -0.19
NOD1-201ENST00000222823 RSPH6AQ9H0K4 717 aa13.86□□□□□ -0.19
NOD1-201ENST00000222823 ZNF530Q6P9A1 599 aaPredicted RBP13.85□□□□□ -0.19
NOD1-201ENST00000222823 CCDC61Q9Y6R9 512 aa13.85□□□□□ -0.19
NOD1-201ENST00000222823 TATP17735 454 aaPredicted RBP13.85□□□□□ -0.19
NOD1-201ENST00000222823 A0A0U1RQG5 324 aaPredicted RBP13.85□□□□□ -0.19
NOD1-201ENST00000222823 FCHSD2O94868 740 aa13.85□□□□□ -0.19
NOD1-201ENST00000222823 HSP90AA2PQ14568 343 aaPredicted RBP13.85□□□□□ -0.19
NOD1-201ENST00000222823 RBM33Q96EV2 1170 aaKnown RBP13.85□□□□□ -0.19
NOD1-201ENST00000222823 MCM2P49736 904 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 CCT4P50991 539 aaKnown RBP13.84□□□□□ -0.19
NOD1-201ENST00000222823 RABEP1Q15276 862 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 ZNF592Q92610 1267 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 ABCC11Q96J66 1382 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 IDI1Q13907 227 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 ZNF428Q96B54 188 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 SRCIN1Q9C0H9 1055 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 BCORL1Q5H9F3 1711 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 ATP7AQ04656 1500 aa13.84□□□□□ -0.19
NOD1-201ENST00000222823 RRS1Q15050 365 aaKnown RBP13.83□□□□□ -0.2
NOD1-201ENST00000222823 PUS7Q96PZ0 661 aaKnown RBP13.83□□□□□ -0.2
NOD1-201ENST00000222823 ERC1Q8IUD2 1116 aa13.83□□□□□ -0.2
NOD1-201ENST00000222823 SDF4Q9BRK5 362 aa13.83□□□□□ -0.2
NOD1-201ENST00000222823 TRAK2O60296 914 aa13.83□□□□□ -0.2
NOD1-201ENST00000222823 CCDC27Q2M243 656 aa13.83□□□□□ -0.2
NOD1-201ENST00000222823 DNAJC2Q99543 621 aaKnown RBP13.83□□□□□ -0.2
NOD1-201ENST00000222823 CARD14Q9BXL6 1004 aa13.83□□□□□ -0.2
NOD1-201ENST00000222823 TTC37Q6PGP7 1564 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 FBXW7Q969H0 707 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 FAM177BA6PVY3 158 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 MRE11P49959 708 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 RBM42Q9BTD8 480 aaKnown RBP13.82□□□□□ -0.2
NOD1-201ENST00000222823 TBC1D2BQ9UPU7 963 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 HIP1O00291 1037 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 PDCP20941 246 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 PCMTD1Q96MG8 357 aaPredicted RBP13.82□□□□□ -0.2
NOD1-201ENST00000222823 STRN4Q9NRL3 753 aa13.82□□□□□ -0.2
NOD1-201ENST00000222823 MEX3CQ5U5Q3 659 aaKnown RBP13.82□□□□□ -0.2
NOD1-201ENST00000222823 HOMER1Q86YM7 354 aa13.81□□□□□ -0.2
NOD1-201ENST00000222823 PLA2R1Q13018 1463 aa13.81□□□□□ -0.2
NOD1-201ENST00000222823 RNF214Q8ND24 703 aa13.81□□□□□ -0.2
NOD1-201ENST00000222823 LRRCC1Q9C099 1032 aa13.81□□□□□ -0.2
NOD1-201ENST00000222823 ANKRD36BQ8N2N9 1353 aa13.81□□□□□ -0.2
NOD1-201ENST00000222823 MBD3O95983 291 aa13.8□□□□□ -0.2
NOD1-201ENST00000222823 ANKLE2Q86XL3 938 aa13.8□□□□□ -0.2
NOD1-201ENST00000222823 PRDM15P57071 1507 aaPredicted RBP13.8□□□□□ -0.2
NOD1-201ENST00000222823 FYB1O15117 783 aa13.8□□□□□ -0.2
NOD1-201ENST00000222823 CTDP1Q9Y5B0 961 aaPredicted RBP13.8□□□□□ -0.2
NOD1-201ENST00000222823 NUDT16Q96DE0 195 aaKnown RBP13.8□□□□□ -0.2
NOD1-201ENST00000222823 TCEAL9Q9UHQ7 104 aa13.8□□□□□ -0.2
NOD1-201ENST00000222823 FAM43AQ8N2R8 423 aa13.8□□□□□ -0.2
NOD1-201ENST00000222823 NASPP49321 788 aaPredicted RBP13.79□□□□□ -0.2
NOD1-201ENST00000222823 UHRF1BP1LA0JNW5 1464 aa13.79□□□□□ -0.2
NOD1-201ENST00000222823 ATP10AO60312 1499 aa13.79□□□□□ -0.2
NOD1-201ENST00000222823 NFE2L2Q16236 605 aa13.79□□□□□ -0.2
NOD1-201ENST00000222823 IGHDP01880 384 aa13.79□□□□□ -0.2
NOD1-201ENST00000222823 SART3Q15020 963 aaKnown RBP13.79□□□□□ -0.2
NOD1-201ENST00000222823 CHD1LQ86WJ1 897 aa13.79□□□□□ -0.2
NOD1-201ENST00000222823 CAVIN1Q6NZI2 390 aaKnown RBP13.78□□□□□ -0.2
NOD1-201ENST00000222823 KIF6Q6ZMV9 814 aa13.78□□□□□ -0.2
NOD1-201ENST00000222823 SSH1Q8WYL5 1049 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms