RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 PRKAR2BP31323 418 aa28.37■■■□□ 2.13
CCDC9-201ENST00000221922 ZKSCAN2Q63HK3 967 aa28.37■■■□□ 2.13
CCDC9-201ENST00000221922 BCL2L13Q9BXK5 485 aa28.37■■■□□ 2.13
CCDC9-201ENST00000221922 SSH2Q76I76 1423 aa28.37■■■□□ 2.13
CCDC9-201ENST00000221922 TSR2Q969E8 191 aaKnown RBP28.36■■■□□ 2.13
CCDC9-201ENST00000221922 DAXXQ9UER7 740 aaPredicted RBP28.36■■■□□ 2.13
CCDC9-201ENST00000221922 EXOSC9Q06265 439 aaKnown RBP28.35■■■□□ 2.13
CCDC9-201ENST00000221922 ADAMTSL3P82987 1691 aa28.35■■■□□ 2.13
CCDC9-201ENST00000221922 RLBP1P12271 317 aa28.34■■■□□ 2.13
CCDC9-201ENST00000221922 SLC4A3P48751 1232 aa28.34■■■□□ 2.13
CCDC9-201ENST00000221922 RRS1Q15050 365 aaKnown RBP28.31■■■□□ 2.12
CCDC9-201ENST00000221922 SMC4Q9NTJ3 1288 aa28.31■■■□□ 2.12
CCDC9-201ENST00000221922 ANKARQ7Z5J8 1434 aa28.31■■■□□ 2.12
CCDC9-201ENST00000221922 NUTM2FA1L443 756 aa28.31■■■□□ 2.12
CCDC9-201ENST00000221922 MVPQ14764 893 aaKnown RBP28.31■■■□□ 2.12
CCDC9-201ENST00000221922 NFE2L2Q16236 605 aa28.31■■■□□ 2.12
CCDC9-201ENST00000221922 USP31Q70CQ4 1352 aa28.31■■■□□ 2.12
CCDC9-201ENST00000221922 RGPD8O14715 1765 aaPredicted RBP28.31■■■□□ 2.12
CCDC9-201ENST00000221922 TTC21AQ8NDW8 1320 aa28.3■■■□□ 2.12
CCDC9-201ENST00000221922 FTSJ3Q8IY81 847 aaKnown RBP28.3■■■□□ 2.12
CCDC9-201ENST00000221922 DZIP1LQ8IYY4 767 aaKnown RBP28.3■■■□□ 2.12
CCDC9-201ENST00000221922 NFKBIBQ15653 356 aa28.3■■■□□ 2.12
CCDC9-201ENST00000221922 TNNQ9UQP3 1299 aa28.29■■■□□ 2.12
CCDC9-201ENST00000221922 USP19O94966 1318 aa28.29■■■□□ 2.12
CCDC9-201ENST00000221922 FMN2Q9NZ56 1722 aa28.29■■■□□ 2.12
CCDC9-201ENST00000221922 HMOX1P09601 288 aa28.28■■■□□ 2.12
CCDC9-201ENST00000221922 CALD1Q05682 793 aaKnown RBP28.28■■■□□ 2.12
CCDC9-201ENST00000221922 PHACTR3Q96KR7 559 aa28.27■■■□□ 2.12
CCDC9-201ENST00000221922 CHD2O14647 1828 aaKnown RBP28.26■■■□□ 2.11
CCDC9-201ENST00000221922 SSH1Q8WYL5 1049 aa28.26■■■□□ 2.11
CCDC9-201ENST00000221922 KCNA6P17658 529 aa28.25■■■□□ 2.11
CCDC9-201ENST00000221922 RWDD1Q9H446 243 aaPredicted RBP28.25■■■□□ 2.11
CCDC9-201ENST00000221922 PCDHB15Q9Y5E8 787 aa28.25■■■□□ 2.11
CCDC9-201ENST00000221922 PEAK1Q9H792 1746 aa28.25■■■□□ 2.11
CCDC9-201ENST00000221922 ZNF428Q96B54 188 aa28.24■■■□□ 2.11
CCDC9-201ENST00000221922 KIF16BQ96L93 1317 aa28.24■■■□□ 2.11
CCDC9-201ENST00000221922 DLG5Q8TDM6 1919 aa28.23■■■□□ 2.11
CCDC9-201ENST00000221922 ALDH1L2Q3SY69 923 aa28.23■■■□□ 2.11
CCDC9-201ENST00000221922 ANKLE2Q86XL3 938 aa28.23■■■□□ 2.11
CCDC9-201ENST00000221922 ATF7IPQ6VMQ6 1270 aa28.22■■■□□ 2.11
CCDC9-201ENST00000221922 RGPD1P0DJD0 1748 aa28.22■■■□□ 2.11
CCDC9-201ENST00000221922 SETD1BQ9UPS6 1966 aaKnown RBP28.22■■■□□ 2.11
CCDC9-201ENST00000221922 IPO8O15397 1037 aaKnown RBP28.21■■■□□ 2.11
CCDC9-201ENST00000221922 TRIM27P14373 513 aa28.21■■■□□ 2.11
CCDC9-201ENST00000221922 PIK3C2AO00443 1686 aa28.2■■■□□ 2.11
CCDC9-201ENST00000221922 DDX19BQ9UMR2 479 aa28.2■■■□□ 2.11
CCDC9-201ENST00000221922 LMOD3Q0VAK6 560 aa28.2■■■□□ 2.1
CCDC9-201ENST00000221922 EIF4A2Q14240 407 aaKnown RBP28.19■■■□□ 2.1
CCDC9-201ENST00000221922 NGDNQ8NEJ9 315 aaKnown RBP28.19■■■□□ 2.1
CCDC9-201ENST00000221922 USP54Q70EL1 1684 aa28.18■■■□□ 2.1
CCDC9-201ENST00000221922 SEC24BO95487 1268 aa28.17■■■□□ 2.1
CCDC9-201ENST00000221922 NOB1Q9ULX3 412 aaKnown RBP28.17■■■□□ 2.1
CCDC9-201ENST00000221922 BRPF1P55201 1214 aaPredicted RBP28.16■■■□□ 2.1
CCDC9-201ENST00000221922 GNAI1P63096 354 aa28.16■■■□□ 2.1
CCDC9-201ENST00000221922 IFT57Q9NWB7 429 aa28.16■■■□□ 2.1
CCDC9-201ENST00000221922 GSE1Q14687 1217 aa28.15■■■□□ 2.1
CCDC9-201ENST00000221922 PDZRN3Q9UPQ7 1066 aa28.14■■■□□ 2.1
CCDC9-201ENST00000221922 ZNF853P0CG23 659 aa28.14■■■□□ 2.09
CCDC9-201ENST00000221922 ITPRIPQ8IWB1 547 aa28.14■■■□□ 2.09
CCDC9-201ENST00000221922 SBNO1A3KN83 1393 aa28.12■■■□□ 2.09
CCDC9-201ENST00000221922 MARF1Q9Y4F3 1742 aaKnown RBP28.12■■■□□ 2.09
CCDC9-201ENST00000221922 FLT4P35916 1363 aa28.11■■■□□ 2.09
CCDC9-201ENST00000221922 HDAC1Q13547 482 aaPredicted RBP28.11■■■□□ 2.09
CCDC9-201ENST00000221922 MAP3K19Q56UN5 1328 aa28.1■■■□□ 2.09
CCDC9-201ENST00000221922 HSP90AB2PQ58FF8 381 aa28.1■■■□□ 2.09
CCDC9-201ENST00000221922 SULT6B1Q6IMI4 303 aa28.1■■■□□ 2.09
CCDC9-201ENST00000221922 THUMPD2Q9BTF0 503 aaKnown RBP28.1■■■□□ 2.09
CCDC9-201ENST00000221922 ARHGEF10O15013 1369 aa28.1■■■□□ 2.09
CCDC9-201ENST00000221922 AEBP1Q8IUX7 1158 aa28.09■■■□□ 2.09
CCDC9-201ENST00000221922 TMEM57Q8N5G2 664 aa28.08■■■□□ 2.09
CCDC9-201ENST00000221922 CFAP44Q96MT7 982 aa28.07■■■□□ 2.08
CCDC9-201ENST00000221922 BECN1Q14457 450 aa28.07■■■□□ 2.08
CCDC9-201ENST00000221922 KIF24Q5T7B8 1368 aa28.06■■■□□ 2.08
CCDC9-201ENST00000221922 ADGRL3Q9HAR2 1447 aa28.06■■■□□ 2.08
CCDC9-201ENST00000221922 VAMP4O75379 141 aa28.06■■■□□ 2.08
CCDC9-201ENST00000221922 ARHGAP45Q92619 1136 aa28.06■■■□□ 2.08
CCDC9-201ENST00000221922 MBIPQ9NS73 344 aa28.06■■■□□ 2.08
CCDC9-201ENST00000221922 NPHP4O75161 1426 aaPredicted RBP28.06■■■□□ 2.08
CCDC9-201ENST00000221922 FRAT2O75474 233 aaPredicted RBP28.05■■■□□ 2.08
CCDC9-201ENST00000221922 CHMP4BQ9H444 224 aaKnown RBP28.04■■■□□ 2.08
CCDC9-201ENST00000221922 ZBTB40Q9NUA8 1239 aa28.04■■■□□ 2.08
CCDC9-201ENST00000221922 TBC1D32Q96NH3 1257 aa28.04■■■□□ 2.08
CCDC9-201ENST00000221922 UPF2Q9HAU5 1272 aaKnown RBP28.03■■■□□ 2.08
CCDC9-201ENST00000221922 KDRP35968 1356 aa28.02■■■□□ 2.08
CCDC9-201ENST00000221922 SOX12O15370 315 aa28.02■■■□□ 2.08
CCDC9-201ENST00000221922 MRPL50Q8N5N7 158 aaKnown RBP28.02■■■□□ 2.08
CCDC9-201ENST00000221922 NLRP6P59044 892 aa28.01■■■□□ 2.07
CCDC9-201ENST00000221922 FAM83GA6ND36 823 aa28■■■□□ 2.07
CCDC9-201ENST00000221922 PHF8Q9UPP1 1060 aa28■■■□□ 2.07
CCDC9-201ENST00000221922 NWD1Q149M9 1564 aa28■■■□□ 2.07
CCDC9-201ENST00000221922 AMPHP49418 695 aa27.98■■■□□ 2.07
CCDC9-201ENST00000221922 TWISTNBQ3B726 338 aaPredicted RBP27.98■■■□□ 2.07
CCDC9-201ENST00000221922 SMC5Q8IY18 1101 aa27.98■■■□□ 2.07
CCDC9-201ENST00000221922 IGSF1Q8N6C5 1336 aa27.98■■■□□ 2.07
CCDC9-201ENST00000221922 IL27Q8NEV9 243 aa27.98■■■□□ 2.07
CCDC9-201ENST00000221922 TSPYL6Q8N831 410 aa27.97■■■□□ 2.07
CCDC9-201ENST00000221922 DCTN1Q14203 1278 aa27.96■■■□□ 2.07
CCDC9-201ENST00000221922 HAP1P54257 671 aaPredicted RBP27.95■■■□□ 2.07
CCDC9-201ENST00000221922 ABTB2Q8N961 1025 aa27.95■■■□□ 2.06
CCDC9-201ENST00000221922 ANTXR1Q9H6X2 564 aa27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms