RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Zscan20B2KFW1 1030 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Trim25Q61510 634 aaKnown RBP14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Rufy2Q8R4C2 606 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 HypkQ9CR41 129 aa14.01□□□□□ -0.17
Trim56-201ENSMUST00000054384 Nup88Q8CEC0 753 aaKnown RBP14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ccdc39Q9D5Y1 937 aa14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Vps8Q0P5W1 1427 aa14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Cep131Q62036 1060 aa14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Fbf1A2A870 1173 aa14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Smarca2Q6DIC0 1577 aa14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Sf3b2Q3UJB0 878 aaKnown RBP14□□□□□ -0.17
Trim56-201ENSMUST00000054384 Tspyl3Q3UYP3 334 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 StambpQ9CQ26 424 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Fsd2Q8BZ52 692 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Wasf1Q8R5H6 559 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Klf15Q9EPW2 415 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Srgap3Q812A2 1099 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ripply1Q2WG77 201 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Golim4Q8BXA1 655 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Iqca1Q9CUL5 857 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Plekhd1B2RPU2 505 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Tax1bp1Q3UKC1 814 aaKnown RBP13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Tmx4Q8C0L0 335 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ncapg2Q6DFV1 1138 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Paxip1Q6NZQ4 1056 aa13.99□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ccdc112A0AUP1 442 aa13.98□□□□□ -0.17
Trim56-201ENSMUST00000054384 Nap1l5Q9JJF0 156 aa13.98□□□□□ -0.17
Trim56-201ENSMUST00000054384 Trim34bJ3QNR8 485 aa13.98□□□□□ -0.17
Trim56-201ENSMUST00000054384 Soga1E1U8D0 1418 aa13.98□□□□□ -0.17
Trim56-201ENSMUST00000054384 PsapQ61207 557 aaKnown RBP13.98□□□□□ -0.17
Trim56-201ENSMUST00000054384 Nf2P46662 596 aa13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 Samm50Q8BGH2 469 aa13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 CftrP26361 1476 aa13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ddx46Q569Z5 1032 aaKnown RBP13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 Spty2d1Q68FG3 682 aa13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 Cetn2Q9R1K9 172 aa13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 ScaperF8VQ70 1398 aaKnown RBP13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 Ppp6r1Q7TSI3 856 aa13.97□□□□□ -0.17
Trim56-201ENSMUST00000054384 Zranb3Q6NZP1 1069 aa13.96□□□□□ -0.17
Trim56-201ENSMUST00000054384 Erlin1Q91X78 346 aa13.96□□□□□ -0.17
Trim56-201ENSMUST00000054384 Atp2b2Q9R0K7 1198 aa13.96□□□□□ -0.17
Trim56-201ENSMUST00000054384 Sptbn5F6UCX4 1208 aa13.96□□□□□ -0.18
Trim56-201ENSMUST00000054384 Hoxa7P02830 229 aa13.96□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cog6Q8R3I3 657 aa13.96□□□□□ -0.18
Trim56-201ENSMUST00000054384 Nap1l2P51860 460 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ell2Q3UKU1 639 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Kif18aQ91WD7 886 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Gm18336A0A140LIU8 765 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Wdr33Q8K4P0 1330 aaKnown RBP13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Syce3B5KM66 88 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Gm42641I6L9G2 585 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Jade2Q6ZQF7 829 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 AtripQ8BMG1 785 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ccdc191J3QQ27 883 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Fkbp4P30416 458 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 MpripP97434 1024 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Pms1Q8K119 917 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Map3k7clP58500 142 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cwc27Q3TKY6 469 aa13.95□□□□□ -0.18
Trim56-201ENSMUST00000054384 Znf526Q8BI66 675 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 4921504E06RikQ8CET2 560 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Tdrd9Q14BI7 1383 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Dnajc2P54103 621 aaKnown RBP13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cecr2E9Q2Z1 1453 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cfap53Q9D439 514 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Mapk8ip1Q9WVI9 707 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Exoc8Q6PGF7 716 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Fam13aQ8BGI4 693 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Puf60Q3UEB3 564 aaKnown RBP13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Galntl5Q9D4M9 431 aa13.94□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ccdc172Q810N9 267 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 NcapgE9PWG6 1004 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Knop1Q9Z2Q2 478 aaKnown RBP13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Pde1cQ64338 706 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Kdm4aQ8BW72 1064 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Smtnl1Q99LM3 459 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 LarsQ8BMJ2 1178 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Luzp1Q8R4U7 1068 aaKnown RBP13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 TimelessQ9R1X4 1197 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ssh1Q76I79 1042 aa13.93□□□□□ -0.18
Trim56-201ENSMUST00000054384 Gm1979E9QAN3 267 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Zfp444Q3TDV8 331 aaKnown RBP13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Skor1Q8BX46 964 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Sycp2Q9CUU3 1500 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cavin1O54724 392 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Gsdma2Q32M21 443 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ppp2r1aQ76MZ3 589 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Riok1Q922Q2 567 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cabp2Q9JLK4 216 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 CarsQ9ER72 831 aaKnown RBP13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 L1td1Q587J6 782 aaKnown RBP13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Vps37dQ810I0 261 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ift140E9PY46 1464 aa13.92□□□□□ -0.18
Trim56-201ENSMUST00000054384 Gm21671G3UY31 267 aa13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Tsg101Q61187 391 aa13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Cc2d1bQ8BRN9 848 aa13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Olr1Q9EQ09 363 aa13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Rnf34Q99KR6 376 aa13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ddx23D3Z0M9 819 aaKnown RBP13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 MycnP03966 462 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 22,080 RNA–protein pairs in 47.7 ms