RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SERPING1P05155 500 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 GP1BAP07359 652 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 GIMD1P0DJR0 217 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 ARL4AP40617 200 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 RENBPP51606 427 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 HGSNATQ68CP4 663 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 ERAP2Q6P179 960 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 SRLQ86TD4 932 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 LUZP1Q86V48 1076 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 MARCH9Q86YJ5 346 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 SP110Q9HB58 689 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 CWC15Q9P013 229 aaKnown RBP19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 CAPN11Q9UMQ6 739 aa19.26■□□□□ 0.67
CCDC28A-203ENST00000617445 CFAP69A5D8W1 941 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 TMEM110-MUSTN1A8MSY1 372 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 H3BRJ5 948 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 K7ESM1 405 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 JUNDP17535 347 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 SERPINA4P29622 427 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 PEX5P50542 639 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 POLR2LP62875 67 aaKnown RBP19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 TARDBPQ13148 414 aaKnown RBP eCLIP19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 DPYSQ14117 519 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 AGERQ15109 404 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 DPYSL2Q16555 572 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 ZNF542PQ5EBM4 170 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 ZCCHC8Q6NZY4 707 aaKnown RBP19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 ARHGAP12Q8IWW6 846 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 NETO2Q8NC67 525 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 ZNF548Q8NEK5 533 aaPredicted RBP19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 EXOC2Q96KP1 924 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 APOLD1Q96LR9 279 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 ZNF599Q96NL3 588 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 CINPQ9BW66 212 aaPredicted RBP19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 SPASTQ9UBP0 616 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 IP6K2Q9UHH9 426 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 CLCA2Q9UQC9 943 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 LUC7L2Q9Y383 392 aaKnown RBP19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 GPSM3Q9Y4H4 160 aa19.25■□□□□ 0.67
CCDC28A-203ENST00000617445 DFFAO00273 331 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 AQP9O43315 295 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 PIGNO95427 931 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 IGFALSP35858 605 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 INSM1Q01101 510 aaPredicted RBP19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 RTP5Q14D33 572 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 LRRC14Q15048 493 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 NIPA2Q8N8Q9 360 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 DCBLD1Q8N8Z6 715 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 TP53I13Q8NBR0 393 aaPredicted RBP19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 TSEN2Q8NCE0 465 aaKnown RBP19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 TEKT4Q8WW24 435 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 PSKH2Q96QS6 385 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 WRAP53Q9BUR4 548 aaKnown RBP19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 PCDH12Q9NPG4 1184 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 SCUBE2Q9NQ36 999 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 SEPT3Q9UH03 358 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 SALL4Q9UJQ4 1053 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 ZFHX4Q86UP3 3567 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 ASXL3Q9C0F0 2248 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 LRRK1Q38SD2 2015 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 CACNA1GO43497 2377 aa19.24■□□□□ 0.67
CCDC28A-203ENST00000617445 ANKRD36A6QL64 1941 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 BUB1BO60566 1050 aaPredicted RBP19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 TPM3P06753 285 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 HSPA9P38646 679 aaKnown RBP19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 BLKP51451 505 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 BCL2L1Q07817 233 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 EIF2B5Q13144 721 aaKnown RBP19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 LRRC73Q5JTD7 316 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 MACC1Q6ZN28 852 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 POLNQ7Z5Q5 900 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 CAMK1DQ8IU85 385 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 NPWQ8N729 165 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 GLMNQ92990 594 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 IL12RB2Q99665 862 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 SLC13A1Q9BZW2 595 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 KLF15Q9UIH9 416 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 LHX6Q9UPM6 363 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 ATP8A1Q9Y2Q0 1164 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 RAXQ9Y2V3 346 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 ADAMTS20P59510 1910 aa19.23■□□□□ 0.67
CCDC28A-203ENST00000617445 A0A1W2PQ67 120 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 MT-CO3P00414 261 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 CYP1A2P05177 515 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 ITIH2P19823 946 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 IL1R2P27930 398 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 EIF4A3P38919 411 aaKnown RBP19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 MMP12P39900 470 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 AP1S1P61966 158 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 TMCO3Q6UWJ1 677 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 SDR16C5Q8N3Y7 309 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 ATL2Q8NHH9 583 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 LMX1AQ8TE12 382 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 ECHDC3Q96DC8 303 aa19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 MBNL1Q9NR56 388 aaKnown RBP19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.22■□□□□ 0.67
CCDC28A-203ENST00000617445 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 MYO1FO00160 1098 aa19.21■□□□□ 0.67
CCDC28A-203ENST00000617445 OPA1O60313 960 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms