RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 ERAP2Q6P179 960 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 BRAT1Q6PJG6 821 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 KDM7AQ6ZMT4 941 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 GLRX5Q86SX6 157 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 RHOT2Q8IXI1 618 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 TC2NQ8N9U0 490 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 PCDH19Q8TAB3 1148 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 HCAR2Q8TDS4 363 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 PSKH2Q96QS6 385 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 COQ6Q9Y2Z9 468 aa16.78■□□□□ 0.28
SREBF1-219ENST00000580540 MFSD11O43934 449 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 LDOC1O95751 146 aaPredicted RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 MAN1A1P33908 653 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 MAGEA1P43355 309 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 NOP2P46087 812 aaKnown RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 SUOXP51687 545 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 MAXP61244 160 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 ITKQ08881 620 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 TMEM52BQ4KMG9 183 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 MARC1Q5VT66 337 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 KYAT3Q6YP21 454 aaKnown RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 ZSWIM9Q86XI8 627 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 SLC22A18ASQ8N1D0 253 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 FAM174AQ8TBP5 190 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 FAM71BQ8TC56 605 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 PDCD6IPQ8WUM4 868 aaKnown RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 RFFLQ8WZ73 363 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 RAPGEF5Q92565 580 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 CNDP2Q96KP4 475 aaKnown RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 LENG8Q96PV6 779 aaPredicted RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 KLF6Q99612 283 aaPredicted RBP16.77■□□□□ 0.28
SREBF1-219ENST00000580540 ZNF670Q9BS34 389 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 ANP32EQ9BTT0 268 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 C1QTNF7Q9BXJ2 289 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 CAAP1Q9H8G2 361 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 SCUBE2Q9NQ36 999 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 DNAJC28Q9NX36 388 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 KLK13Q9UKR3 277 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 WASF3Q9UPY6 502 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 ATP8A1Q9Y2Q0 1164 aa16.77■□□□□ 0.28
SREBF1-219ENST00000580540 TDRD6O60522 2096 aaKnown RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 TSPAN11A1L157 253 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 LRRD1A4D1F6 860 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 A8MX80 341 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 RIOK3O14730 519 aaKnown RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 LZTS3O60299 673 aaPredicted RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 HSPA9P38646 679 aaKnown RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 ARHGAP25P42331 645 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 MMP13P45452 471 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 RABIFP47224 123 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 LIG3P49916 1009 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 AP1S1P61966 158 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 PDE1CQ14123 709 aaPredicted RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 ODF2Q5BJF6 829 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 NCBP2-AS2Q69YL0 99 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 RAB44Q7Z6P3 723 aaPredicted RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 DCP2Q8IU60 420 aaKnown RBP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 PGBD5Q8N414 524 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.76■□□□□ 0.27
SREBF1-219ENST00000580540 DENND6BQ8NEG7 585 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 LRRN4Q8WUT4 740 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 ASB12Q8WXK4 309 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 ADAMTS14Q8WXS8 1223 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 NT5MQ9NPB1 228 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 HYOU1Q9Y4L1 999 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 PCDHGC4Q9Y5F7 938 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 SHROOM3Q8TF72 1996 aa16.76■□□□□ 0.27
SREBF1-219ENST00000580540 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.75■□□□□ 0.27
SREBF1-219ENST00000580540 ENC1O14682 589 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 FFAR2O15552 330 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 NEBLO76041 1014 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 PEX11BO96011 259 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 KDELR1P24390 212 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 THOP1P52888 689 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 POLR2LP62875 67 aaKnown RBP16.75■□□□□ 0.27
SREBF1-219ENST00000580540 DNAJC3Q13217 504 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 PAFAH1B3Q15102 231 aaKnown RBP16.75■□□□□ 0.27
SREBF1-219ENST00000580540 SPA17Q15506 151 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 GAS2L3Q86XJ1 694 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 LRRC49Q8IUZ0 686 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.75■□□□□ 0.27
SREBF1-219ENST00000580540 CENPTQ96BT3 561 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 NSMCE3Q96MG7 304 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 NUDCD1Q96RS6 583 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 MAK16Q9BXY0 300 aaKnown RBP16.75■□□□□ 0.27
SREBF1-219ENST00000580540 NOD2Q9HC29 1040 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 MBNL1Q9NR56 388 aaKnown RBP16.75■□□□□ 0.27
SREBF1-219ENST00000580540 UCKL1Q9NWZ5 548 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 TOR4AQ9NXH8 423 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 INTUQ9ULD6 942 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 TTLL3Q9Y4R7 772 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 ACACBO00763 2458 aa16.75■□□□□ 0.27
SREBF1-219ENST00000580540 SPOPO43791 374 aa16.74■□□□□ 0.27
SREBF1-219ENST00000580540 MTA2O94776 668 aa16.74■□□□□ 0.27
SREBF1-219ENST00000580540 KRT1P04264 644 aa16.74■□□□□ 0.27
SREBF1-219ENST00000580540 C6P13671 934 aa16.74■□□□□ 0.27
SREBF1-219ENST00000580540 DGKAP23743 735 aa16.74■□□□□ 0.27
SREBF1-219ENST00000580540 IGFALSP35858 605 aa16.74■□□□□ 0.27
SREBF1-219ENST00000580540 GARSP41250 739 aaKnown RBP16.74■□□□□ 0.27
SREBF1-219ENST00000580540 GBE1Q04446 702 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms