RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CDH18Q13634 790 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 NEPROQ6NW34 567 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 ELMSAN1Q6PJG2 1045 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 Q6ZNB5 142 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 MTO1Q9Y2Z2 717 aaKnown RBP16.98■□□□□ 0.31
LDLR-206ENST00000557958 SH3BP1Q9Y3L3 701 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 A0A096LPK6 155 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 GOLGA8TH3BQL2 631 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 PLIN3O60664 434 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 APOA4P06727 396 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 SGSHP51688 502 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 TEAD2Q15562 447 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 DUSP6Q16828 381 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 GPR158Q5T848 1215 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 ZNF470Q6ECI4 717 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 CXorf57Q6NSI4 855 aaKnown RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 CARNMT1Q8N4J0 409 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 C7orf26Q96N11 449 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 SMG9Q9H0W8 520 aaKnown RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 SLC7A4O43246 635 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 LUC7L3O95232 432 aaKnown RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 NDST3O95803 873 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 HNRNPA1P09651 372 aaKnown RBP eCLIP16.97■□□□□ 0.31
LDLR-206ENST00000557958 ATXN1LP0C7T5 689 aaKnown RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 CD151P48509 253 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 PRAMEP78395 509 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 USP10Q14694 798 aaKnown RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 CHI3L2Q15782 390 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 RAPH1Q70E73 1250 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 CMC1Q7Z7K0 106 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 GALNT7Q86SF2 657 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 FAM217AQ8IXS0 508 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 C2CD4AQ8NCU7 369 aaPredicted RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 OR52K2Q8NGK3 314 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 SMG7Q92540 1137 aaKnown RBP16.97■□□□□ 0.31
LDLR-206ENST00000557958 WBP2Q969T9 261 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 ZNF576Q9H609 170 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 NPHS2Q9NP85 383 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 SCUBE2Q9NQ36 999 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 SLC2A6Q9UGQ3 507 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 SLC39A10Q9ULF5 831 aa16.97■□□□□ 0.31
LDLR-206ENST00000557958 MROH6A6NGR9 719 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 MUSKO15146 869 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 INSIG1O15503 277 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 ARNTP27540 789 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 EP400NLQ6ZTU2 488 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 HTR3DQ70Z44 454 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 CPXM2Q8N436 756 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 SHKBP1Q8TBC3 707 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 ING5Q8WYH8 240 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 PPP2R3CQ969Q6 453 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 MRPL38Q96DV4 380 aaKnown RBP16.96■□□□□ 0.31
LDLR-206ENST00000557958 SLC46A2Q9BY10 475 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 ABCF3Q9NUQ8 709 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 ZDHHC7Q9NXF8 308 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 VPS28Q9UK41 221 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 FBXO5Q9UKT4 447 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 RIMKLBQ9ULI2 386 aa16.96■□□□□ 0.31
LDLR-206ENST00000557958 ANAPC1Q9H1A4 1944 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 AHSGP02765 367 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 PROCP04070 461 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 COL6A2P12110 1019 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 GRK2P25098 689 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 CRABP2P29373 138 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 SLC1A2P43004 574 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 NUMBP49757 651 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 SCNN1BP51168 640 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 SLC12A2P55011 1212 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 ACTN3Q08043 901 aaPredicted RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 NSUN2Q08J23 767 aaKnown RBP eCLIP16.95■□□□□ 0.3
LDLR-206ENST00000557958 STX3Q13277 289 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 SLC12A1Q13621 1099 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 GRM3Q14832 879 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 SLC5A9Q2M3M2 681 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 ARHGAP15Q53QZ3 475 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 FASTKD1Q53R41 847 aaKnown RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 INO80DQ53TQ3 878 aaPredicted RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 RALGPS1Q5JS13 557 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 MPP7Q5T2T1 576 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 BRSK1Q8TDC3 778 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 LRRC37BQ96QE4 947 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 NUDCD1Q96RS6 583 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 MECRQ9BV79 373 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.95■□□□□ 0.3
LDLR-206ENST00000557958 CHD5Q8TDI0 1954 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 H0YHG0 523 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 GREM1O60565 184 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 CRTAMO95727 393 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 C2P06681 752 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 DDX6P26196 483 aaKnown RBP eCLIP16.95■□□□□ 0.3
LDLR-206ENST00000557958 HOXA9P31269 272 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 AVPR1AP37288 418 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 KPNA2P52292 529 aaKnown RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 ZXDBP98169 803 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 BST1Q10588 318 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 MSLNQ13421 630 aaPredicted RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 CBX2Q14781 532 aaPredicted RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 MPPE1Q53F39 396 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 PPM1JQ5JR12 505 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 RARS2Q5T160 578 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms