RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PCDH20Q8N6Y1 951 aaKnown RBP18.77■□□□□ 0.59
CLN3-206ENST00000360019 MRRFQ96E11 262 aaKnown RBP18.77■□□□□ 0.59
CLN3-206ENST00000360019 PGM2Q96G03 612 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 ATP6V1G3Q96LB4 118 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 DHRS4Q9BTZ2 278 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 IL1RAPL1Q9NZN1 696 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 FETUBQ9UGM5 382 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 TCAF1Q9Y4C2 921 aa18.77■□□□□ 0.59
CLN3-206ENST00000360019 ANKRD36A6QL64 1941 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 KIAA1549LQ6ZVL6 1849 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 FAM159BA6NKW6 160 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 FZD6O60353 706 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 CDH16O75309 829 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 GSRP00390 522 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 DLDP09622 509 aaKnown RBP18.76■□□□□ 0.59
CLN3-206ENST00000360019 BMP1P13497 986 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 ADRA1DP25100 572 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 SNRPD1P62314 119 aaKnown RBP18.76■□□□□ 0.59
CLN3-206ENST00000360019 Q6ZVU0 165 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 TDRPQ86YL5 185 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 CAMK1DQ8IU85 385 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 SFTPA1Q8IWL2 248 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 PPHLN1Q8NEY8 458 aaKnown RBP18.76■□□□□ 0.59
CLN3-206ENST00000360019 PTCD2Q8WV60 388 aaKnown RBP18.76■□□□□ 0.59
CLN3-206ENST00000360019 RANBP9Q96S59 729 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 PAFAH2Q99487 392 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 MRM3Q9HC36 420 aaKnown RBP18.76■□□□□ 0.59
CLN3-206ENST00000360019 VPS18Q9P253 973 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 BCCIPQ9P287 314 aaKnown RBP eCLIP18.76■□□□□ 0.59
CLN3-206ENST00000360019 PRKAG3Q9UGI9 489 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 SLC24A2Q9UI40 661 aa18.76■□□□□ 0.59
CLN3-206ENST00000360019 C2CD4DB7Z1M9 353 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 MBTPS2O43462 519 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 PIGNO95427 931 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 ASLP04424 464 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 ATP5BP06576 529 aaKnown RBP18.75■□□□□ 0.59
CLN3-206ENST00000360019 MAPK8P45983 427 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 SMAD4Q13485 552 aaKnown RBP18.75■□□□□ 0.59
CLN3-206ENST00000360019 TNFAIP8L3Q5GJ75 292 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 RYBPQ8N488 228 aaPredicted RBP18.75■□□□□ 0.59
CLN3-206ENST00000360019 TERB1Q8NA31 727 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLN3-206ENST00000360019 LPCAT1Q8NF37 534 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 FRS2Q8WU20 508 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 PDCD6IPQ8WUM4 868 aaKnown RBP18.75■□□□□ 0.59
CLN3-206ENST00000360019 ELOVL2Q9NXB9 296 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 LGALS13Q9UHV8 139 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 FAM169AQ9Y6X4 670 aa18.75■□□□□ 0.59
CLN3-206ENST00000360019 TTC34A8MYJ7 566 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 TRAFD1O14545 582 aaPredicted RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 RGS16O15492 202 aaPredicted RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 SRPRAP08240 638 aaKnown RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 PIRTP0C851 137 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 ALADP13716 330 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 VASPP50552 380 aaPredicted RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 SEPT6Q14141 434 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 SMAD1Q15797 465 aaKnown RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 ITPRIPL2Q3MIP1 535 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 CARD16Q5EG05 197 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 AGBL2Q5U5Z8 902 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 DPY19L3Q6ZPD9 716 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 CYP4X1Q8N118 509 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 RMDN1Q96DB5 314 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 CERS2Q96G23 380 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 SMIM14Q96QK8 99 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 PPCSQ9HAB8 311 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 SLC2A6Q9UGQ3 507 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 TBK1Q9UHD2 729 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 PCDHB9Q9Y5E1 797 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 HEATR9A2RTY3 570 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 BNIP3LO60238 219 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 CCNHP51946 323 aaPredicted RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 BCL2L1Q07817 233 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 FRG1Q14331 258 aaKnown RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 SKIV2LQ15477 1246 aaKnown RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 MYLK3Q32MK0 819 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 ESRP1Q6NXG1 681 aaKnown RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 CTAGE3PQ8IX95 158 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 RIBC1Q8N443 379 aaPredicted RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 PPM1NQ8N819 430 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 OR2A12Q8NGT7 310 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 BLOC1S5Q8TDH9 187 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 DCAKDQ8WVC6 231 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 SLC44A1Q8WWI5 657 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 TLCD1Q96CP7 247 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 GUCD1Q96NT3 240 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 BRD9Q9H8M2 597 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 TREX1Q9NSU2 369 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 SLC17A6Q9P2U8 582 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 NOVA2Q9UNW9 492 aaKnown RBP18.74■□□□□ 0.59
CLN3-206ENST00000360019 SPO11Q9Y5K1 396 aa18.74■□□□□ 0.59
CLN3-206ENST00000360019 MROH6A6NGR9 719 aa18.73■□□□□ 0.59
CLN3-206ENST00000360019 HMGB1P1B2RPK0 211 aaPredicted RBP18.73■□□□□ 0.59
CLN3-206ENST00000360019 ANKRD66B4E2M5 251 aa18.73■□□□□ 0.59
CLN3-206ENST00000360019 HTRA2O43464 458 aaPredicted RBP18.73■□□□□ 0.59
CLN3-206ENST00000360019 LDB2O43679 373 aa18.73■□□□□ 0.59
CLN3-206ENST00000360019 UGT1A9O60656 530 aa18.73■□□□□ 0.59
CLN3-206ENST00000360019 PGLSO95336 258 aa18.73■□□□□ 0.59
CLN3-206ENST00000360019 ERVK-10P10266 1014 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms