RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 VAPBO95292 243 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 FGF1P05230 155 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 MMP2P08253 660 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 PFKLP17858 780 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 PDE1CQ14123 709 aaPredicted RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 SMAD1Q15797 465 aaKnown RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 NUDCD3Q8IVD9 361 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 SUGP1Q8IWZ8 645 aaKnown RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 C12orf76Q8N812 135 aaPredicted RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 OR7D4Q8NG98 312 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 PTPRN2Q92932 1015 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 VPS39Q96JC1 886 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 PSKH2Q96QS6 385 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 MGME1Q9BQP7 344 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 PIDD1Q9HB75 910 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 TREX1Q9NSU2 369 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 MYO7AQ13402 2215 aa17■□□□□ 0.31
LDLR-206ENST00000557958 LOC285095A0A1B0GVY8 99 aa17■□□□□ 0.31
LDLR-206ENST00000557958 PTPN2P17706 415 aa17■□□□□ 0.31
LDLR-206ENST00000557958 MAGEA12P43365 314 aa17■□□□□ 0.31
LDLR-206ENST00000557958 CHRNA4P43681 627 aa17■□□□□ 0.31
LDLR-206ENST00000557958 CDK18Q07002 472 aa17■□□□□ 0.31
LDLR-206ENST00000557958 SETDB1Q15047 1291 aa17■□□□□ 0.31
LDLR-206ENST00000557958 CCDC153Q494R4 210 aa17■□□□□ 0.31
LDLR-206ENST00000557958 LACTB2Q53H82 288 aaPredicted RBP17■□□□□ 0.31
LDLR-206ENST00000557958 CGB2Q6NT52 195 aa17■□□□□ 0.31
LDLR-206ENST00000557958 KIAA0408Q6ZU52 694 aa17■□□□□ 0.31
LDLR-206ENST00000557958 OTOAQ7RTW8 1153 aa17■□□□□ 0.31
LDLR-206ENST00000557958 CCDC91Q7Z6B0 441 aa17■□□□□ 0.31
LDLR-206ENST00000557958 LCA5Q86VQ0 697 aa17■□□□□ 0.31
LDLR-206ENST00000557958 TMC8Q8IU68 726 aa17■□□□□ 0.31
LDLR-206ENST00000557958 MICALL1Q8N3F8 863 aa17■□□□□ 0.31
LDLR-206ENST00000557958 PGBD5Q8N414 524 aa17■□□□□ 0.31
LDLR-206ENST00000557958 ZFRQ96KR1 1074 aaKnown RBP17■□□□□ 0.31
LDLR-206ENST00000557958 ZNF778Q96MU6 729 aa17■□□□□ 0.31
LDLR-206ENST00000557958 TSNARE1Q96NA8 513 aa17■□□□□ 0.31
LDLR-206ENST00000557958 APOL5Q9BWW9 433 aa17■□□□□ 0.31
LDLR-206ENST00000557958 DNMT3BQ9UBC3 853 aaKnown RBP17■□□□□ 0.31
LDLR-206ENST00000557958 CPQQ9Y646 472 aa17■□□□□ 0.31
LDLR-206ENST00000557958 USH1CQ9Y6N9 552 aa17■□□□□ 0.31
LDLR-206ENST00000557958 H0Y626 953 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TSPAN3O60637 253 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 SIN3BO75182 1162 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 C1RP00736 705 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 BGNP21810 368 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 NTHL1P78549 312 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TMPRSS15P98073 1019 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 SF3A3Q12874 501 aaKnown RBP eCLIP16.99■□□□□ 0.31
LDLR-206ENST00000557958 CHD9Q3L8U1 2897 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TSTD2Q5T7W7 516 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 N4BP2L1Q5TBK1 243 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 ESRP1Q6NXG1 681 aaKnown RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 RTL10Q7L3V2 364 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 GRASPQ7Z6J2 395 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 SREK1Q8WXA9 508 aaKnown RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 PEX13Q92968 403 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 E2F7Q96AV8 911 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TCEAL4Q96EI5 215 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 GPR22Q99680 433 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 ACE2Q9BYF1 805 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 TRIM55Q9BYV6 548 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 SIRPGQ9P1W8 387 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 DPP7Q9UHL4 492 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 ANKRD6Q9Y2G4 727 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 ARIH1Q9Y4X5 557 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 TRAV19A0A0A6YYK7 116 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 CCDC78A2IDD5 438 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 NRG2O14511 850 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 XYLBO75191 536 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 DCTN3O75935 186 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 FSBPO95073 299 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TGDSO95455 350 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 FGF19O95750 216 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 CKMP06732 381 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 BPGMP07738 259 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 RHOP08100 348 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 ARCN1P48444 511 aaKnown RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 CNGA3Q16281 694 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TAF1BQ53T94 588 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 SIRPB2Q5JXA9 342 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 RNF219Q5W0B1 726 aaPredicted RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 ICE2Q659A1 982 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TMC5Q6UXY8 1006 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 ZC3HC1Q86WB0 502 aaKnown RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 LMNTD2Q8IXW0 634 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 PPP1R14CQ8TAE6 165 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TMA16Q96EY4 203 aaKnown RBP16.99■□□□□ 0.31
LDLR-206ENST00000557958 ATXN7L3BQ96GX2 97 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 MCMBPQ9BTE3 642 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 LRRC3Q9BY71 257 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 LMAN2LQ9H0V9 348 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 MID2Q9UJV3 735 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 TLK1Q9UKI8 766 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 CDH23Q9H251 3354 aa16.99■□□□□ 0.31
LDLR-206ENST00000557958 CBX4O00257 560 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 TBL1XO60907 577 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 CCR2P41597 374 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 LIG3P49916 1009 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 SLC7A9P82251 487 aa16.98■□□□□ 0.31
LDLR-206ENST00000557958 CCDC15Q0P6D6 951 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms