RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 HECAQ9UBI9 543 aaPredicted RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 CXorf51AA0A1B0GTR3 108 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 PMS2P1A4D2B8 440 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 C16orf96A6NNT2 1141 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 EFSO43281 561 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 SUV39H1O43463 412 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 TSHRP16473 764 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 LINC00303Q3SY05 128 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 ZNF805Q5CZA5 627 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 SMYD5Q6GMV2 418 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 FOXR2Q6PJQ5 311 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 OLFML1Q6UWY5 402 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 PASD1Q8IV76 773 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 TRIM59Q8IWR1 403 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 ZNF397Q8NF99 534 aaPredicted RBP17.19■□□□□ 0.34
VPS29-204ENST00000548259 OR7D4Q8NG98 312 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 SPATA20Q8TB22 786 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 OSBPL1AQ9BXW6 950 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 PIGVQ9NUD9 493 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 MPP6Q9NZW5 540 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 PCDHGC3Q9UN70 934 aa17.19■□□□□ 0.34
VPS29-204ENST00000548259 TDRD6O60522 2096 aaKnown RBP17.19■□□□□ 0.34
VPS29-204ENST00000548259 PTPN13Q12923 2485 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 TMEM110-MUSTN1A8MSY1 372 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 D6RAR5 112 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 RNF103O00237 685 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 SRGAP2O75044 1071 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 TM7SF2O76062 418 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 FGFR1OPO95684 399 aaKnown RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 HTR1BP28222 390 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 CCKBRP32239 447 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 SULT1E1P49888 294 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 PDX1P52945 283 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 RNASE9P60153 205 aaKnown RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 PTK2Q05397 1052 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 SRSF1Q07955 248 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS29-204ENST00000548259 COLEC12Q5KU26 742 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 KLHL10Q6JEL2 608 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 VPS36Q86VN1 386 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 GKN2Q86XP6 184 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 FMR1NBQ8N0W7 255 aaPredicted RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 ATL2Q8NHH9 583 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 CXorf40AQ8TE69 158 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 CCDC74AQ96AQ1 378 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 PGAP3Q96FM1 320 aaPredicted RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 NPY6RQ99463 290 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 CPEB1Q9BZB8 566 aaKnown RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 ZYG11BQ9C0D3 744 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 AKAP7Q9P0M2 348 aaPredicted RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 PISDQ9UG56 409 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 HPCAL4Q9UM19 191 aa17.18■□□□□ 0.34
VPS29-204ENST00000548259 UBR5O95071 2799 aaPredicted RBP17.18■□□□□ 0.34
VPS29-204ENST00000548259 IGLV3-10A0A075B6K4 115 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 ZNF821O75541 412 aaPredicted RBP17.17■□□□□ 0.34
VPS29-204ENST00000548259 RPLP0P05388 317 aaKnown RBP17.17■□□□□ 0.34
VPS29-204ENST00000548259 FAM87AP0C7U9 286 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 EIF4A3P38919 411 aaKnown RBP17.17■□□□□ 0.34
VPS29-204ENST00000548259 SNRPD1P62314 119 aaKnown RBP17.17■□□□□ 0.34
VPS29-204ENST00000548259 GNA12Q03113 381 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 RAD51Q06609 339 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 TPRG1LQ5T0D9 272 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 TTC7BQ86TV6 843 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 WDTC1Q8N5D0 677 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 CENPTQ96BT3 561 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 HAPLN3Q96S86 360 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 CMKLR1Q99788 373 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 TM6SF2Q9BZW4 377 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 TCEAL2Q9H3H9 227 aaPredicted RBP17.17■□□□□ 0.34
VPS29-204ENST00000548259 ACP6Q9NPH0 428 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 SIRPGQ9P1W8 387 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 GPR34Q9UPC5 381 aa17.17■□□□□ 0.34
VPS29-204ENST00000548259 FCF1Q9Y324 198 aaKnown RBP17.17■□□□□ 0.34
VPS29-204ENST00000548259 DOCK9Q9BZ29 2069 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 KRIT1O00522 736 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 NOBOXO60393 691 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 ZMPSTE24O75844 475 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 RASGRP1O95267 797 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 POP4O95707 220 aaKnown RBP17.16■□□□□ 0.34
VPS29-204ENST00000548259 ERBB2P04626 1255 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 CD82P27701 267 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 PEX5P50542 639 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 HK3P52790 923 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 TGIF1Q15583 401 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 ARHGAP44Q17R89 818 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 SLC25A52Q3SY17 297 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 TMEM164Q5U3C3 297 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 TTI2Q6NXR4 508 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 B3GNT8Q7Z7M8 397 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 ZNF683Q8IZ20 524 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 NELFBQ8WX92 580 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 EDEM3Q9BZQ6 932 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 FOXP3Q9BZS1 431 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 CLPBQ9H078 707 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 PDCL3Q9H2J4 239 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 LOXL2Q9Y4K0 774 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 TRPM6Q9BX84 2022 aa17.16■□□□□ 0.34
VPS29-204ENST00000548259 BOD1L1Q8NFC6 3051 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 UGT2B4P06133 528 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 ITGB6P18564 788 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 IGFALSP35858 605 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms