RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CLCNKBP51801 687 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 AIMP2Q13155 320 aaKnown RBP7.73□□□□□ -1.17
NUP54-215ENST00000514313 FGFBP1Q14512 234 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 COL28A1Q2UY09 1125 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 SPECC1Q5M775 1068 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 ZNF362Q5T0B9 420 aaPredicted RBP7.73□□□□□ -1.17
NUP54-215ENST00000514313 SUMO4Q6EEV6 95 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 FBXO42Q6P3S6 717 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 KRT74Q7RTS7 529 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 MAP4K1Q92918 833 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 BBS4Q96RK4 519 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 PIMREGQ9BSJ6 248 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 KIF9Q9HAQ2 790 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 PLK2Q9NYY3 685 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 SUCLA2Q9P2R7 463 aaPredicted RBP7.73□□□□□ -1.17
NUP54-215ENST00000514313 GIMAP2Q9UG22 337 aa7.73□□□□□ -1.17
NUP54-215ENST00000514313 DDTLA6NHG4 134 aaPredicted RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 C2CD4BA6NLJ0 364 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 DKC1O60832 514 aaKnown RBP eCLIP7.72□□□□□ -1.17
NUP54-215ENST00000514313 TMCC1O94876 653 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 IPO7O95373 1038 aaKnown RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 KRT10P13645 584 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 PTPN2P17706 415 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 SLC12A2P55011 1212 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 CALD1Q05682 793 aaKnown RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 PKP1Q13835 747 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 HIST2H2ACQ16777 129 aaPredicted RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 LRRC8EQ6NSJ5 796 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 RPUSD3Q6P087 351 aaKnown RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 PRPF39Q86UA1 669 aaKnown RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 SCML4Q8N228 414 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 PLEKHA4Q9H4M7 779 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 WDR6Q9NNW5 1121 aaKnown RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 ASAH2Q9NR71 780 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 DLGAP2Q9P1A6 1054 aa7.72□□□□□ -1.17
NUP54-215ENST00000514313 ARPP21Q9UBL0 812 aaPredicted RBP7.72□□□□□ -1.17
NUP54-215ENST00000514313 TRBV5-7A0A0A0MS05 114 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 A0A1W2PRQ8 180 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 FAM90A8PA6NJQ4 464 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 CCER2I3L3R5 266 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 EBAG9O00559 213 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 ENTPD3O75355 529 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 RB1P06400 928 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 CD63P08962 238 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 FAM90A13PP0C7W8 464 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 FAM90A24PP0C7X0 464 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 GABRB1P18505 474 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 PMPCAQ10713 525 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 RASA2Q15283 850 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 TMEM119Q4V9L6 283 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 AAGABQ6PD74 315 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 CRELD2Q6UXH1 353 aaPredicted RBP7.71□□□□□ -1.18
NUP54-215ENST00000514313 FAM83HQ6ZRV2 1179 aaPredicted RBP7.71□□□□□ -1.18
NUP54-215ENST00000514313 GSTA5Q7RTV2 222 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 TBC1D26Q86UD7 250 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 KRTAP19-1Q8IUB9 90 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 ADGRF4Q8IZF3 695 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 CMASQ8NFW8 434 aaPredicted RBP7.71□□□□□ -1.18
NUP54-215ENST00000514313 RASSF8Q8NHQ8 419 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 ZNF419Q96HQ0 510 aaPredicted RBP7.71□□□□□ -1.18
NUP54-215ENST00000514313 RADILQ96JH8 1075 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 PRRX2Q99811 253 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 PLEKHB1Q9UF11 243 aaPredicted RBP7.71□□□□□ -1.18
NUP54-215ENST00000514313 FAM96BQ9Y3D0 163 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 SESN1Q9Y6P5 492 aa7.71□□□□□ -1.18
NUP54-215ENST00000514313 POLR2AP24928 1970 aaKnown RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 A8MV72 311 aaPredicted RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 RHODO00212 210 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 SH2B2O14492 632 aaPredicted RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 FOXN1O15353 648 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 ADAM20O43506 726 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 GCP02774 474 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 PRR35P0CG20 571 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 CTPS1P17812 591 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 RYKP34925 604 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 PTGER1P34995 402 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 GRIK3Q13003 919 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 RUNX2Q13950 521 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 ASTE1Q2TB18 679 aaPredicted RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 CXorf66Q5JRM2 361 aaPredicted RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 KIAA0930Q6ICG6 404 aaPredicted RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 ZNF813Q6ZN06 617 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 IGFN1Q86VF2 1251 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 LURAP1LQ8IV03 231 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 ZKSCAN4Q969J2 545 aaPredicted RBP7.7□□□□□ -1.18
NUP54-215ENST00000514313 SCNM1Q9BWG6 230 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 LAMP3Q9UQV4 416 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 MTMR6Q9Y217 621 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 CARD8Q9Y2G2 431 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 AOX1Q06278 1338 aa7.7□□□□□ -1.18
NUP54-215ENST00000514313 DPPA5A6NC42 116 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 HSPB2A8KAH6 182 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 FOXO6A8MYZ6 492 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 LCKP06239 509 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 HOXB5P09067 269 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 IL7RP16871 459 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 ITGAXP20702 1163 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 PROZP22891 400 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 CENPAP49450 140 aa7.69□□□□□ -1.18
NUP54-215ENST00000514313 OLIG2Q13516 323 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms