RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TDRD3Q9H7E2 651 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 TELO2Q9Y4R8 837 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 AK5Q9Y6K8 562 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 CYB561D2O14569 222 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 UGT2B11O75310 529 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 DNASE1L1P49184 302 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 PRKAG1P54619 331 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 CRY1Q16526 586 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 FBXO30Q8TB52 745 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 COMMD4Q9H0A8 199 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 LEF1Q9UJU2 399 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 RPS6KA4O75676 772 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 CST1P01037 141 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 SCN1BQ07699 218 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 OR52K2Q8NGK3 314 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 PRDM16Q9HAZ2 1276 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 OAS3Q9Y6K5 1087 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 A0A1B0GVC2 190 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 C2orf71A6NGG8 1288 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 CCNDBP1O95273 360 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 HMGCRP04035 888 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 E2F2Q14209 437 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 GTF2IRD2BQ6EKJ0 949 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 DGLUCYQ7Z3D6 616 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 GTF2IRD2Q86UP8 949 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 LPCAT1Q8NF37 534 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 EXD2Q9NVH0 621 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 HACD1B0YJ81 288 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 RIPPLY1Q0D2K3 151 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 ANXA8L1Q5VT79 327 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 POLD4Q9HCU8 107 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 RBM22Q9NW64 420 aaKnown RBP eCLIP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 PECAM1P16284 738 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 RPA3P35244 121 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 PIK3CBP42338 1070 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 TMEM17Q86X19 198 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 QTRT2Q9H974 415 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 MYBP10242 640 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 PVALBP20472 110 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 CYP2F1P24903 491 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 AKT2P31751 481 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 GRIA3P42263 894 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 BCL2L1Q07817 233 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 ELAVL2Q12926 359 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 CCDC107Q8WV48 283 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 RFKQ969G6 155 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 RAD51AP1Q96B01 352 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 MTFMTQ96DP5 389 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 OMDQ99983 421 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 POMCP01189 267 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 THP07101 528 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TRAPPC5Q8IUR0 188 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 MCFD2Q8NI22 146 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 SETD6Q8TBK2 473 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 PPP3R2Q96LZ3 170 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TBL1YQ9BQ87 522 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 DCXO43602 365 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 CATP04040 527 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 SNRPB2P08579 225 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 WEE1P30291 646 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 MRPS22P82650 360 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 ACAP2Q15057 778 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 RNF43Q68DV7 783 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 C17orf50Q8WW18 174 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 KANSL3Q9P2N6 904 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 B8ZZF3 427 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 C21orf2O43822 256 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TFRCP02786 760 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 PDHBP11177 359 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TAF1CQ15572 869 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 ALX1Q15699 326 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 PIH1D3Q9NQM4 214 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 MOCS1Q9NZB8 636 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 DDX20Q9UHI6 824 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 SAMHD1Q9Y3Z3 626 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 SHROOM2Q13796 1616 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 OR2AT4A6NND4 320 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TOP3BO95985 862 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 CCNE2O96020 404 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 DBIP07108 87 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 FNDC3BQ53EP0 1204 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 FAM76BQ5HYJ3 339 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 FAM91A1Q658Y4 838 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 CNSTQ6PJW8 725 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 DHRS1Q96LJ7 313 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 SEMA3GQ9NS98 782 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 HPF1Q9NWY4 346 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 METP08581 1390 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 ARPC4P59998 168 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 AADACL4Q5VUY2 407 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 STAG3L4Q8TBR4 150 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC4A5Q9BY07 1137 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 C3orf14Q9HBI5 128 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 MRPS33Q9Y291 106 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 ROR2Q01974 943 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TOB2Q14106 344 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 CGRRF1Q99675 332 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 TMEM121Q9BTD3 319 aa14.04□□□□□ -0.16
CCDC88A-201ENST00000263630 KANTRA0A1W2PQU2 76 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 DCDC2CA8MYV0 355 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms