RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 MYO1CO00159 1063 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 AP3B1O00203 1094 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 USP1O94782 785 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 CDH4P55283 916 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 DLX2Q07687 328 aaPredicted RBP22.93■■□□□ 1.26
CDX1-201ENST00000231656 CTC1Q2NKJ3 1217 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 LINC00523Q86TU6 105 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 NPAS3Q8IXF0 933 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 CPXM2Q8N436 756 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 ZNF669Q96BR6 464 aaPredicted RBP22.93■■□□□ 1.26
CDX1-201ENST00000231656 GRAMD1AQ96CP6 724 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 HMCESQ96FZ2 354 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 PITPNM3Q9BZ71 974 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 VPS11Q9H270 941 aa22.93■■□□□ 1.26
CDX1-201ENST00000231656 RBM22Q9NW64 420 aaKnown RBP eCLIP22.93■■□□□ 1.26
CDX1-201ENST00000231656 SPTBN5Q9NRC6 3674 aaKnown RBP22.93■■□□□ 1.26
CDX1-201ENST00000231656 MYLKQ15746 1914 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 ZCWPW2A0A1B0GU75 182 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 FAM237BA0A1B0GVD1 139 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 MAGEB16A2A368 324 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 SOX1O00570 391 aaPredicted RBP22.92■■□□□ 1.26
CDX1-201ENST00000231656 COPEO14579 308 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 TBX10O75333 385 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 CLDN11O75508 207 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 ANXA9O76027 345 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 CDH17Q12864 832 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 ZNF77Q15935 545 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 ANO4Q32M45 955 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 ANKRD20A4Q4UJ75 823 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 RNF187Q5TA31 235 aaPredicted RBP22.92■■□□□ 1.26
CDX1-201ENST00000231656 MROH9Q5TGP6 573 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 FAM47EQ6ZV65 393 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 CCT6BQ92526 530 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 ZNF75CPQ92670 426 aaPredicted RBP22.92■■□□□ 1.26
CDX1-201ENST00000231656 FGF13Q92913 245 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 PPP1R2P1Q96PQ5 205 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 IL22Q9GZX6 179 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 PRKAG3Q9UGI9 489 aa22.92■■□□□ 1.26
CDX1-201ENST00000231656 A0A1B0GVM2 712 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 TCAF2A6NFQ2 919 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 CCT8L1PA6NM43 557 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 ERVK-10P10266 1014 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 TCF3P15923 654 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 WEE1P30291 646 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 USP4Q13107 963 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 CDHR3Q6ZTQ4 885 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 CCDC121Q6ZUS5 278 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 CHST9Q7L1S5 443 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 RASSF3Q86WH2 238 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 SERBP1Q8NC51 408 aaKnown RBP eCLIP22.91■■□□□ 1.26
CDX1-201ENST00000231656 TMA16Q96EY4 203 aaKnown RBP22.91■■□□□ 1.26
CDX1-201ENST00000231656 SRPK1Q96SB4 655 aaKnown RBP22.91■■□□□ 1.26
CDX1-201ENST00000231656 TBL1YQ9BQ87 522 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 CLDND1Q9NY35 253 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 SOX13Q9UN79 622 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 PSAT1Q9Y617 370 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 DOCK8Q8NF50 2099 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 ATP9BO43861 1147 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 MT-CYBP00156 380 aaPredicted RBP22.91■■□□□ 1.26
CDX1-201ENST00000231656 IGFBP4P22692 258 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 ADRA1AP35348 466 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 GET4Q7L5D6 327 aaPredicted RBP22.91■■□□□ 1.26
CDX1-201ENST00000231656 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.91■■□□□ 1.26
CDX1-201ENST00000231656 TDRD5Q8NAT2 981 aaKnown RBP22.91■■□□□ 1.26
CDX1-201ENST00000231656 FAM111AQ96PZ2 611 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 S1PR5Q9H228 398 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 SLCO1B3Q9NPD5 702 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 IL1RAPL1Q9NZN1 696 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 STARD13Q9Y3M8 1113 aa22.91■■□□□ 1.26
CDX1-201ENST00000231656 MYOFQ9NZM1 2061 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 EDF1O60869 148 aaKnown RBP22.9■■□□□ 1.26
CDX1-201ENST00000231656 RAMP2O60895 175 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 TBL1XO60907 577 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 TPH1P17752 444 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 GEMP55040 296 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 EP400NLQ6ZTU2 488 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 HJURPQ8NCD3 748 aaPredicted RBP22.9■■□□□ 1.26
CDX1-201ENST00000231656 ZFATQ9P243 1243 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 PHTF1Q9UMS5 762 aa22.9■■□□□ 1.26
CDX1-201ENST00000231656 MIA3Q5JRA6 1907 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 YBEYP58557 167 aaPredicted RBP22.89■■□□□ 1.26
CDX1-201ENST00000231656 HNRNPDQ14103 355 aaKnown RBP22.89■■□□□ 1.26
CDX1-201ENST00000231656 POLD3Q15054 466 aaPredicted RBP22.89■■□□□ 1.26
CDX1-201ENST00000231656 PARP15Q460N3 678 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 ATAT1Q5SQI0 421 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 DENND5AQ6IQ26 1287 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 CES5AQ6NT32 575 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 CELF5Q8N6W0 485 aaKnown RBP22.89■■□□□ 1.26
CDX1-201ENST00000231656 IPMKQ8NFU5 416 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 FAM161BQ96MY7 647 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 KDM4CQ9H3R0 1056 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 ARL2BPQ9Y2Y0 163 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 PLLPQ9Y342 182 aa22.89■■□□□ 1.26
CDX1-201ENST00000231656 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.89■■□□□ 1.25
CDX1-201ENST00000231656 TYW5A2RUC4 315 aaKnown RBP22.89■■□□□ 1.25
CDX1-201ENST00000231656 WDR91A4D1P6 747 aa22.89■■□□□ 1.25
CDX1-201ENST00000231656 J3KR12 359 aa22.89■■□□□ 1.25
CDX1-201ENST00000231656 LTBRP36941 435 aa22.89■■□□□ 1.25
CDX1-201ENST00000231656 ZNF177Q13360 481 aaPredicted RBP22.89■■□□□ 1.25
CDX1-201ENST00000231656 SPRED3Q2MJR0 410 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms