RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 NMBRP28336 390 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 SERPINH1P50454 418 aaKnown RBP18.35■□□□□ 0.53
VIM-201ENST00000224237 MPP2Q14168 576 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 IHHQ14623 411 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 RAB30Q15771 203 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 INO80DQ53TQ3 878 aaPredicted RBP18.35■□□□□ 0.53
VIM-201ENST00000224237 KCNMB4Q86W47 210 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 SLC25A41Q8N5S1 370 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 VN1R2Q8NFZ6 395 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 DYDC1Q8WWB3 177 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 ING5Q8WYH8 240 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 IFT43Q96FT9 208 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 FEM1CQ96JP0 617 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 SNAP91O60641 907 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 CR2P20023 1033 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 HLA-DPA1P20036 260 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 CA4P22748 312 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 CYTH1Q15438 398 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 DUSP6Q16828 381 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 PACS1Q6VY07 963 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 MGARPQ8TDB4 240 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 ALG14Q96F25 216 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 RANBP9Q96S59 729 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 CPNE1Q99829 537 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 C2orf49Q9BVC5 232 aaPredicted RBP18.35■□□□□ 0.53
VIM-201ENST00000224237 CCDC134Q9H6E4 229 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 SLC28A3Q9HAS3 691 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 PIDD1Q9HB75 910 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 IL1RAPL1Q9NZN1 696 aa18.35■□□□□ 0.53
VIM-201ENST00000224237 KIAA1522Q9P206 1035 aaPredicted RBP18.35■□□□□ 0.53
VIM-201ENST00000224237 MYLKQ15746 1914 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 HEATR9A2RTY3 570 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 INSIG1O15503 277 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 GJB3O75712 270 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 TMCC1O94876 653 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 TCF3P15923 654 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 PAMP19021 973 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 GP5P40197 560 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 CDK18Q07002 472 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 ZNF77Q15935 545 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 FYB2Q5VWT5 728 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 PDPK2PQ6A1A2 396 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 FIBINQ8TAL6 211 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 ACDQ96AP0 544 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 ZNF778Q96MU6 729 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 SCUBE2Q9NQ36 999 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 C20orf96Q9NUD7 363 aaPredicted RBP18.34■□□□□ 0.53
VIM-201ENST00000224237 PLK2Q9NYY3 685 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 TBC1D14Q9P2M4 693 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 VPS51Q9UID3 782 aa18.34■□□□□ 0.53
VIM-201ENST00000224237 MRPS23Q9Y3D9 190 aaKnown RBP18.34■□□□□ 0.53
VIM-201ENST00000224237 TNRC18O15417 2968 aaPredicted RBP18.33■□□□□ 0.53
VIM-201ENST00000224237 ZWINTO95229 277 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 PAPLNO95428 1278 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 PRAMEF12O95522 483 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 CD160O95971 181 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 FGF1P05230 155 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 ATXN1LP0C7T5 689 aaKnown RBP18.33■□□□□ 0.53
VIM-201ENST00000224237 CEBPBP17676 345 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 SCNN1BP51168 640 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 USP4Q13107 963 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 LRRC14Q15048 493 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 HSP90AA5PQ58FG0 334 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 SIRPB2Q5JXA9 342 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 TMC5Q6UXY8 1006 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 BANPQ8N9N5 519 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 BCAS4Q8TDM0 211 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 SMG7Q92540 1137 aaKnown RBP18.33■□□□□ 0.53
VIM-201ENST00000224237 SERAC1Q96JX3 654 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 ZSWIM3Q96MP5 696 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 NUDCD1Q96RS6 583 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 NOD2Q9HC29 1040 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 NSMCE4AQ9NXX6 385 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 SLC17A6Q9P2U8 582 aa18.33■□□□□ 0.53
VIM-201ENST00000224237 SZT2Q5T011 3432 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 GOLGA8RI6L899 631 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 RGRP47804 291 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 SLC18A2Q05940 514 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 LMAN2Q12907 356 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 DNAJC3Q13217 504 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 BMPR2Q13873 1038 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 SEPT6Q14141 434 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 CBX2Q14781 532 aaPredicted RBP18.33■□□□□ 0.52
VIM-201ENST00000224237 TEDDM1Q5T9Z0 273 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 GRTP1Q5TC63 336 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 RETSATQ6NUM9 610 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 LINGO4Q6UY18 593 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 SH2D5Q6ZV89 423 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 EXOC2Q96KP1 924 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 SFXN1Q9H9B4 322 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 TREX1Q9NSU2 369 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 ARIH1Q9Y4X5 557 aaPredicted RBP18.33■□□□□ 0.52
VIM-201ENST00000224237 PSAT1Q9Y617 370 aa18.33■□□□□ 0.52
VIM-201ENST00000224237 C5orf42Q9H799 3197 aa18.32■□□□□ 0.52
VIM-201ENST00000224237 GMNCA6NCL1 334 aa18.32■□□□□ 0.52
VIM-201ENST00000224237 TM9SF1O15321 606 aa18.32■□□□□ 0.52
VIM-201ENST00000224237 PYGBP11216 843 aa18.32■□□□□ 0.52
VIM-201ENST00000224237 RPA3P35244 121 aaPredicted RBP18.32■□□□□ 0.52
VIM-201ENST00000224237 NSUN2Q08J23 767 aaKnown RBP eCLIP18.32■□□□□ 0.52
VIM-201ENST00000224237 MSLNQ13421 630 aaPredicted RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms