RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CHRNB1P11230 501 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 TNFRSF1BP20333 461 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 ABCD1P33897 745 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 DCAF7P61962 342 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 SLC9B1Q4ZJI4 515 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 HYIQ5T013 277 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 ZNF575Q86XF7 245 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 DPP10Q8N608 796 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 ARFGAP1Q8N6T3 406 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 MCPH1Q8NEM0 835 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 ZNF419Q96HQ0 510 aaPredicted RBP4.72□□□□□ -1.65
CCDC54-201ENST00000261058 NAP1L5Q96NT1 182 aaPredicted RBP4.72□□□□□ -1.65
CCDC54-201ENST00000261058 MPHOSPH8Q99549 860 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 GLIS2Q9BZE0 524 aaPredicted RBP4.72□□□□□ -1.65
CCDC54-201ENST00000261058 TASP1Q9H6P5 420 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 VEZTQ9HBM0 779 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 WDR6Q9NNW5 1121 aaKnown RBP4.72□□□□□ -1.65
CCDC54-201ENST00000261058 SMC4Q9NTJ3 1288 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 C20orf141Q9NUB4 165 aa4.72□□□□□ -1.65
CCDC54-201ENST00000261058 PLEKHB1Q9UF11 243 aaPredicted RBP4.72□□□□□ -1.65
CCDC54-201ENST00000261058 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.72□□□□□ -1.65
CCDC54-201ENST00000261058 A0A0U1RQG5 324 aaPredicted RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 NPIPB15A6NHN6 443 aaPredicted RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 HSPB6O14558 160 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 CLEC3BP05452 202 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 GALTP07902 379 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 UBL4AP11441 157 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 CYP19A1P11511 503 aaPredicted RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 PRF1P14222 555 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 CTPS1P17812 591 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 RASSF2P50749 326 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 KLF9Q13886 244 aaPredicted RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 RBMS2Q15434 407 aaKnown RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 SERTAD4-AS1Q5TG53 156 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 TXNDC8Q6A555 127 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 NCAPH2Q6IBW4 605 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 C11orf87Q6NUJ2 197 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 TMEM71Q6P5X7 295 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 TMTC3Q6ZXV5 915 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 MOB3CQ70IA8 216 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 C1QL2Q7Z5L3 287 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 TADA2BQ86TJ2 420 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 CHD1LQ86WJ1 897 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 CADM3Q8N126 398 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 LRRC57Q8N9N7 239 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 METTL6Q8TCB7 284 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 GDPD5Q8WTR4 605 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 RPL36ALQ969Q0 106 aaKnown RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 ZNF333Q96JL9 665 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 WDR77Q9BQA1 342 aaPredicted RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 SNTG1Q9NSN8 517 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 OLA1Q9NTK5 396 aaKnown RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 ZBTB40Q9NUA8 1239 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 TRNAU1APQ9NX07 287 aaKnown RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 ZNF70Q9UC06 446 aaPredicted RBP4.71□□□□□ -1.66
CCDC54-201ENST00000261058 AASSQ9UDR5 926 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 CDH22Q9UJ99 828 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 PCDHGB5Q9Y5G0 923 aa4.71□□□□□ -1.66
CCDC54-201ENST00000261058 DNAJC9-AS1A6NH13 148 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 USO1O60763 962 aaKnown RBP4.7□□□□□ -1.66
CCDC54-201ENST00000261058 TACC1O75410 805 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 PTPN2P17706 415 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 PSMA4P25789 261 aaKnown RBP4.7□□□□□ -1.66
CCDC54-201ENST00000261058 FMO4P31512 558 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 RGS2P41220 211 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 GPR12P47775 334 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 EIF5P55010 431 aaKnown RBP4.7□□□□□ -1.66
CCDC54-201ENST00000261058 YWHAZP63104 245 aaKnown RBP4.7□□□□□ -1.66
CCDC54-201ENST00000261058 DUSP6Q16828 381 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 Q5PR19 223 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 GPATCH4Q5T3I0 446 aaKnown RBP4.7□□□□□ -1.66
CCDC54-201ENST00000261058 ATG9BQ674R7 924 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 HMBOX1Q6NT76 420 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 SHC4Q6S5L8 630 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 KRBA2Q6ZNG9 492 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 B4GALNT4Q76KP1 1039 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 RRM2BQ7LG56 351 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 DIS3L2Q8IYB7 885 aaKnown RBP4.7□□□□□ -1.66
CCDC54-201ENST00000261058 MMP21Q8N119 569 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 TMEM174Q8WUU8 243 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 KLHL29Q96CT2 875 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 KLHL15Q96M94 604 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 C1QTNF7Q9BXJ2 289 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 IRAK4Q9NWZ3 460 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 NCKIPSDQ9NZQ3 722 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 CAMK2AQ9UQM7 478 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 PCSK5Q92824 1860 aa4.7□□□□□ -1.66
CCDC54-201ENST00000261058 A0A096LPK6 155 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 TEX13CA0A0J9YWL9 993 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 PGPEP1LA6NFU8 196 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 MOSPD3O75425 235 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 CLDN7O95471 211 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 MMP3P08254 477 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 DCTDP32321 178 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 ICAM3P32942 547 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 PTGER1P34995 402 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 CPOXP36551 454 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 MMP13P45452 471 aa4.69□□□□□ -1.66
CCDC54-201ENST00000261058 ALDH7A1P49419 539 aaKnown RBP4.69□□□□□ -1.66
CCDC54-201ENST00000261058 CXCR3P49682 368 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms