RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CADM4Q8NFZ8 388 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 ISG20Q96AZ6 181 aaKnown RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 HMCESQ96FZ2 354 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 HSPA12BQ96MM6 686 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 BAG1Q99933 345 aaPredicted RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 ZNF670Q9BS34 389 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 GPR174Q9BXC1 333 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 CALN1Q9BXU9 219 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 ARRDC1-AS1Q9H2J1 176 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 SP110Q9HB58 689 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 CD93Q9NPY3 652 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 DYRK4Q9NR20 520 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 VPS45Q9NRW7 570 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 FBXL12Q9NXK8 326 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 WSB2Q9NYS7 404 aaPredicted RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 CWC15Q9P013 229 aaKnown RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 SUSD2Q9UGT4 822 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 PCDHA13Q9Y5I0 950 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 EPN1Q9Y6I3 576 aaPredicted RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 DMDP11532 3685 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 A0A0A6YYK5 440 aaPredicted RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 BCLAF3A2AJT9 711 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 SOWAHDA6NJG2 315 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 LRRC72A6NJI9 287 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 MID1O15344 667 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 SLC7A4O43246 635 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 BUB1O43683 1085 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 SPOPO43791 374 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 RNASEH2AO75792 299 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 SEMA4FO95754 770 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 IGSF6O95976 241 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 GSRP00390 522 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 MT-CO1P00395 513 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 VAV1P15498 845 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 TCF4P15884 667 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 NOP2P46087 812 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 HADHBP55084 474 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 RAD51Q06609 339 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 SERINC3Q13530 473 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 INO80DQ53TQ3 878 aaPredicted RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 SYT12Q8IV01 421 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 RGL4Q8IZJ4 473 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 FRMD1Q8N878 549 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 PIP4K2CQ8TBX8 421 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 GDAP1L1Q96MZ0 367 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 CSPG4P5Q96PW8 444 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 NOL6Q9H6R4 1146 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 LRRC19Q9H756 370 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 PCDH18Q9HCL0 1135 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 SEMA4GQ9NTN9 838 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 UBA2Q9UBT2 640 aaPredicted RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 IL36AQ9UHA7 158 aa13.24□□□□□ -0.29
CLK3-224ENST00000568605 TPX2Q9ULW0 747 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 FCF1Q9Y324 198 aaKnown RBP13.24□□□□□ -0.29
CLK3-224ENST00000568605 A0A1W2PP55 124 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 K7ERQ8 282 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 DFFAO00273 331 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 KPNA3O00505 521 aaPredicted RBP13.23□□□□□ -0.29
CLK3-224ENST00000568605 SMAD6O43541 496 aaKnown RBP13.23□□□□□ -0.29
CLK3-224ENST00000568605 NRDCO43847 1150 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 TMCC1O94876 653 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 GNSP15586 552 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 CHRNA3P32297 505 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 PTGER3P43115 390 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 DNA2P51530 1060 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 RHOAP61586 193 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 PRR23CQ6ZRP0 262 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 KIAA1328Q86T90 577 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 PLPP6Q8IY26 295 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 KIAA2013Q8IYS2 634 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 RYBPQ8N488 228 aaPredicted RBP13.23□□□□□ -0.29
CLK3-224ENST00000568605 HDDC3Q8N4P3 179 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 DCLK2Q8N568 766 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 KCTD6Q8NC69 237 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 TMIEQ8NEW7 156 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 OR2AP1Q8NGE2 309 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 OR2A12Q8NGT7 310 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 CEP76Q8TAP6 659 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 FAM71BQ8TC56 605 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 GRIN3AQ8TCU5 1115 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 PIGKQ92643 395 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 CELF6Q96J87 481 aaKnown RBP13.23□□□□□ -0.29
CLK3-224ENST00000568605 LRIG1Q96JA1 1093 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 FAM129BQ96TA1 746 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 TM6SF2Q9BZW4 377 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 TNKS2Q9H2K2 1166 aa13.23□□□□□ -0.29
CLK3-224ENST00000568605 ATXN2Q99700 1313 aaKnown RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 KHNYNO15037 678 aaKnown RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 ZNF806P0C7X5 589 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 CCNHP51946 323 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 VAV2P52735 878 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 TAS2R40P59535 323 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 DPYSL3Q14195 570 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 RFTN1Q14699 578 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 GRM3Q14832 879 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 AASDHQ4L235 1098 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 CARD16Q5EG05 197 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 PLA2G2CQ5R387 149 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 LRRC38Q5VT99 294 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 DCAF12L1Q5VU92 463 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms